RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 S100GP29377 79 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 LPAR6P43657 344 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 NKX2-1P43699 371 aaPredicted RBP3.98□□□□□ -1.77
USP48-202ENST00000374730 RAB5CP51148 216 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 UCP2P55851 309 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 ERVFC1-1P60608 527 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 ERVK11-1P61568 191 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 DEFA5Q01523 94 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 TGFBR3Q03167 851 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 BAXQ07812 192 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 TSC22D1Q15714 1073 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 NMSQ5H8A3 153 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 FAM76BQ5HYJ3 339 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 KRTAP5-11Q6L8G4 156 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 Q6P435 159 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 WDR73Q6P4I2 378 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 Q6ZRG5 221 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 P4HA3Q7Z4N8 544 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 TBC1D26Q86UD7 250 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 CMTM1Q8IZ96 169 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 H1FOOQ8IZA3 346 aaPredicted RBP3.98□□□□□ -1.77
USP48-202ENST00000374730 SELENOHQ8IZQ5 122 aaKnown RBP3.98□□□□□ -1.77
USP48-202ENST00000374730 PUSL1Q8N0Z8 303 aaKnown RBP3.98□□□□□ -1.77
USP48-202ENST00000374730 SUMF2Q8NBJ7 301 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 OR52M1Q8NGK5 317 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 OR5D13Q8NGL4 314 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 NEK7Q8TDX7 302 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 SECTM1Q8WVN6 248 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 ERGIC1Q969X5 290 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 NARS2Q96I59 477 aaKnown RBP3.98□□□□□ -1.77
USP48-202ENST00000374730 SRSF8Q9BRL6 282 aaKnown RBP3.98□□□□□ -1.77
USP48-202ENST00000374730 DEFB127Q9H1M4 99 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 CDH20Q9HBT6 801 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 UQCC1Q9NVA1 299 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 PURGQ9UJV8 347 aaKnown RBP3.98□□□□□ -1.77
USP48-202ENST00000374730 POLDIP2Q9Y2S7 368 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 STRAPQ9Y3F4 350 aaKnown RBP3.98□□□□□ -1.77
USP48-202ENST00000374730 OR2W1Q9Y3N9 320 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 FRYQ5TBA9 3013 aa3.98□□□□□ -1.77
USP48-202ENST00000374730 INTS1Q8N201 2190 aaKnown RBP3.97□□□□□ -1.77
USP48-202ENST00000374730 TRAV17A0A0B4J275 112 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 IGKV1D-13A0A0B4J2D9 117 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 A0A1B0GW64 132 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 NKX2-6A6NCS4 301 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 OOEPA6NGQ2 149 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 CBY3A6NI87 242 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 FAM74A7A6NL05 159 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 FAM157AC9JC47 383 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.97□□□□□ -1.77
USP48-202ENST00000374730 TOR1AO14656 332 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 IGKV3-20P01619 116 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 DANCRP0C864 163 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 PGA5P0DJD9 388 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 IGKV1-13P0DP09 117 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 MUC1P15941 1255 aaPredicted RBP3.97□□□□□ -1.77
USP48-202ENST00000374730 AGAP20933 346 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 IGHV1-2P23083 117 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 TUBG1P23258 451 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 CA6P23280 308 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 F2RP25116 425 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 DVL1P1P54792 670 aaPredicted RBP3.97□□□□□ -1.77
USP48-202ENST00000374730 UBE2NP61088 152 aaKnown RBP3.97□□□□□ -1.77
USP48-202ENST00000374730 PPP1CBP62140 327 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 EWSR1Q01844 656 aaKnown RBP eCLIP3.97□□□□□ -1.77
USP48-202ENST00000374730 ZNF266Q14584 549 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 GNMTQ14749 295 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 ZNF146Q15072 292 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 OR8G1Q15617 311 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 HMGN3Q15651 99 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 GUCA2BQ16661 112 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 FAM74A3Q4VXF1 159 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 CXorf66Q5JRM2 361 aaPredicted RBP3.97□□□□□ -1.77
USP48-202ENST00000374730 SPIN3Q5JUX0 258 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 LCE1EQ5T753 118 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 ATP1A1-AS1Q5TC04 95 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 DHRS7BQ6IAN0 325 aaPredicted RBP3.97□□□□□ -1.77
USP48-202ENST00000374730 OR2T2Q6IF00 324 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 MEX3BQ6ZN04 569 aaKnown RBP3.97□□□□□ -1.77
USP48-202ENST00000374730 ZNF497Q6ZNH5 498 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 ZNF818PQ6ZRF7 136 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 Q6ZT83 130 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 WDR86Q86TI4 376 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 ZNF695Q8IW36 515 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 BATF2Q8N1L9 274 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 SUMF1Q8NBK3 374 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 LFNGQ8NES3 379 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 OR8G5Q8NG78 346 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 TMEM18Q96B42 140 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 BSCL2Q96G97 398 aaPredicted RBP3.97□□□□□ -1.77
USP48-202ENST00000374730 AKR1E2Q96JD6 320 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 ZNF488Q96MN9 340 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 DUX5Q96PT3 197 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 ADAT1Q9BUB4 502 aaKnown RBP3.97□□□□□ -1.77
USP48-202ENST00000374730 C1QTNF4Q9BXJ3 329 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 SMIM3Q9BZL3 60 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 SLC25A31Q9H0C2 315 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 WFDC1Q9HC57 220 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 HES4Q9HCC6 221 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 TREM1Q9NP99 234 aa3.97□□□□□ -1.77
USP48-202ENST00000374730 ASCL3Q9NQ33 180 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms