RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 CBR4Q8N4T8 237 aa10.44□□□□□ -0.74
VPS29-201ENST00000360579 ZNF383Q8NA42 475 aa10.44□□□□□ -0.74
VPS29-201ENST00000360579 DRAXINQ8NBI3 349 aaPredicted RBP10.44□□□□□ -0.74
VPS29-201ENST00000360579 SETD6Q8TBK2 473 aa10.44□□□□□ -0.74
VPS29-201ENST00000360579 SLC29A1Q99808 456 aa10.44□□□□□ -0.74
VPS29-201ENST00000360579 FAAP24Q9BTP7 215 aa10.44□□□□□ -0.74
VPS29-201ENST00000360579 PARP12Q9H0J9 701 aaKnown RBP10.44□□□□□ -0.74
VPS29-201ENST00000360579 C11orf54Q9H0W9 315 aaPredicted RBP10.44□□□□□ -0.74
VPS29-201ENST00000360579 RIMS4Q9H426 269 aaPredicted RBP10.44□□□□□ -0.74
VPS29-201ENST00000360579 ZNF221Q9UK13 617 aa10.44□□□□□ -0.74
VPS29-201ENST00000360579 MGAT4AQ9UM21 535 aa10.44□□□□□ -0.74
VPS29-201ENST00000360579 LOC100130705A0A1B0GUX0 176 aa10.43□□□□□ -0.74
VPS29-201ENST00000360579 A0A1W2PPK0 400 aa10.43□□□□□ -0.74
VPS29-201ENST00000360579 CIB2O75838 187 aa10.43□□□□□ -0.74
VPS29-201ENST00000360579 SSBP2P81877 361 aaPredicted RBP10.43□□□□□ -0.74
VPS29-201ENST00000360579 MED21Q13503 144 aa10.43□□□□□ -0.74
VPS29-201ENST00000360579 GUCA2BQ16661 112 aa10.43□□□□□ -0.74
VPS29-201ENST00000360579 DEFB114Q30KQ6 69 aa10.43□□□□□ -0.74
VPS29-201ENST00000360579 FAM209BQ5JX69 171 aa10.43□□□□□ -0.74
VPS29-201ENST00000360579 C6orf201Q7Z4U5 140 aa10.43□□□□□ -0.74
VPS29-201ENST00000360579 THRSPQ92748 146 aa10.43□□□□□ -0.74
VPS29-201ENST00000360579 PTX4Q96A99 478 aa10.43□□□□□ -0.74
VPS29-201ENST00000360579 CYYR1Q96J86 154 aa10.43□□□□□ -0.74
VPS29-201ENST00000360579 PGLYRP3Q96LB9 341 aa10.43□□□□□ -0.74
VPS29-201ENST00000360579 ZC4H2Q9NQZ6 224 aa10.43□□□□□ -0.74
VPS29-201ENST00000360579 TECRQ9NZ01 308 aaKnown RBP10.43□□□□□ -0.74
VPS29-201ENST00000360579 EXOSC1Q9Y3B2 195 aaKnown RBP10.43□□□□□ -0.74
VPS29-201ENST00000360579 RYR1P21817 5038 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 FAM223BA6NKX1 122 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 PROP1O75360 226 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 TUSC2O75896 110 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 NDUFB8O95169 186 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 LALBAP00709 142 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 DEFA5Q01523 94 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 CBX3Q13185 183 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 PMS2P11Q13670 270 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 FAM223AQ8IWN6 122 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.42□□□□□ -0.74
VPS29-201ENST00000360579 APH1BQ8WW43 257 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 PYDC1Q8WXC3 89 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 DERL3Q96Q80 235 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 PHB2Q99623 299 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 GGTLC1Q9BX51 225 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 TMEM59Q9BXS4 323 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 WFDC10AQ9H1F0 79 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 SLC35D1Q9NTN3 355 aa10.42□□□□□ -0.74
VPS29-201ENST00000360579 DIMT1Q9UNQ2 313 aaKnown RBP10.42□□□□□ -0.74
VPS29-201ENST00000360579 KLK5Q9Y337 293 aaPredicted RBP10.42□□□□□ -0.74
VPS29-201ENST00000360579 TRBV6-6A0A0A6YYG2 114 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 BMPR1BO00238 502 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 DYNC1I1O14576 645 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 ATP5HO75947 161 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 IGLV2-23P01705 113 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 CRYGBP07316 175 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 OR9G9P0C7N8 305 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 MAPK3P27361 379 aaPredicted RBP10.41□□□□□ -0.74
VPS29-201ENST00000360579 KIR2DS2P43631 304 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 TAS2R43P59537 309 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 RPS27AP62979 156 aaKnown RBP10.41□□□□□ -0.74
VPS29-201ENST00000360579 HLA-DRB3P79483 266 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 TAGLNQ01995 201 aaKnown RBP10.41□□□□□ -0.74
VPS29-201ENST00000360579 PJVKQ0ZLH3 352 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 EXOSC2Q13868 293 aaKnown RBP10.41□□□□□ -0.74
VPS29-201ENST00000360579 CEMP1Q6PRD7 247 aaPredicted RBP10.41□□□□□ -0.74
VPS29-201ENST00000360579 ADAD2Q8NCV1 583 aaKnown RBP10.41□□□□□ -0.74
VPS29-201ENST00000360579 HARBI1Q96MB7 349 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 OVOL2Q9BRP0 275 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 PLEKHJ1Q9NW61 149 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 OR1A1Q9P1Q5 309 aa10.41□□□□□ -0.74
VPS29-201ENST00000360579 LOC102724200A0A096LPH7 203 aaPredicted RBP10.4□□□□□ -0.74
VPS29-201ENST00000360579 MSGN1A6NI15 193 aa10.4□□□□□ -0.74
VPS29-201ENST00000360579 M0R1X1 148 aa10.4□□□□□ -0.74
VPS29-201ENST00000360579 MPPED1O15442 326 aa10.4□□□□□ -0.74
VPS29-201ENST00000360579 FOLR2P14207 255 aa10.4□□□□□ -0.74
VPS29-201ENST00000360579 MAP2K4P45985 399 aa10.4□□□□□ -0.74
VPS29-201ENST00000360579 RHOGP84095 191 aa10.4□□□□□ -0.74
VPS29-201ENST00000360579 ATP5G2Q06055 141 aa10.4□□□□□ -0.74
VPS29-201ENST00000360579 SMN1Q16637 294 aaKnown RBP10.4□□□□□ -0.74
VPS29-201ENST00000360579 ZFP41Q8N8Y5 198 aa10.4□□□□□ -0.74
VPS29-201ENST00000360579 KCNG3Q8TAE7 436 aa10.4□□□□□ -0.74
VPS29-201ENST00000360579 C9orf16Q9BUW7 83 aa10.4□□□□□ -0.74
VPS29-201ENST00000360579 TM2D1Q9BX74 207 aa10.4□□□□□ -0.74
VPS29-201ENST00000360579 ZNF230Q9UIE0 474 aaPredicted RBP10.4□□□□□ -0.74
VPS29-201ENST00000360579 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.39□□□□□ -0.75
VPS29-201ENST00000360579 C2orf70A6NJV1 201 aa10.39□□□□□ -0.75
VPS29-201ENST00000360579 SHOXO15266 292 aa10.39□□□□□ -0.75
VPS29-201ENST00000360579 WBP4O75554 376 aaKnown RBP10.39□□□□□ -0.75
VPS29-201ENST00000360579 HTR2CP28335 458 aa10.39□□□□□ -0.75
VPS29-201ENST00000360579 LINC00205P59089 165 aa10.39□□□□□ -0.75
VPS29-201ENST00000360579 TNFRSF9Q07011 255 aa10.39□□□□□ -0.75
VPS29-201ENST00000360579 ANKRD55Q3KP44 614 aa10.39□□□□□ -0.75
VPS29-201ENST00000360579 TTC23Q5W5X9 447 aa10.39□□□□□ -0.75
VPS29-201ENST00000360579 GLT8D1Q68CQ7 371 aa10.39□□□□□ -0.75
VPS29-201ENST00000360579 ZFP1Q6P2D0 407 aa10.39□□□□□ -0.75
VPS29-201ENST00000360579 RPP25LQ8N5L8 163 aaKnown RBP10.39□□□□□ -0.75
VPS29-201ENST00000360579 WDR89Q96FK6 387 aaPredicted RBP10.39□□□□□ -0.75
VPS29-201ENST00000360579 AKIP1Q9NQ31 210 aa10.39□□□□□ -0.75
VPS29-201ENST00000360579 CLEC2DQ9UHP7 191 aa10.39□□□□□ -0.75
VPS29-201ENST00000360579 TP53TG1Q9Y2A0 90 aa10.39□□□□□ -0.75
VPS29-201ENST00000360579 TRBV9A0A0B4J1U6 114 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms