RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 NTN5Q8WTR8 489 aaPredicted RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 IL22RA2Q969J5 263 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 MRPL48Q96GC5 212 aaKnown RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 ZNF2Q9BSG1 426 aaPredicted RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 OR51B6Q9H340 312 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 PRORYQ9H606 182 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 VSIRQ9H7M9 311 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 FAM212BQ9NTI7 297 aaPredicted RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 SDHAF2Q9NX18 166 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 CTSZQ9UBR2 303 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 CACFD1Q9UGQ2 172 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 MPC1Q9Y5U8 109 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 DOPEY2Q9Y3R5 2298 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 VPS13BQ7Z7G8 4022 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 DNAH5Q8TE73 4624 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 FLNBO75369 2602 aaKnown RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 DPRXA6NFQ7 191 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 OR5H1A6NKK0 313 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 ZNF732B4DXR9 585 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 H0Y980 276 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 SCGB1D1O95968 90 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 CYB5AP00167 134 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 DANCRP0C864 163 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 PAX1P15863 534 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 FUT3P21217 361 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 NPPCP23582 126 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 CPT2P23786 658 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 PSMB6P28072 239 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 VDAC2P45880 294 aaPredicted RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 FHITP49789 147 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 AP3S2P59780 193 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 KRTAP1-1Q07627 177 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 ZNF273Q14593 569 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 HAGHQ16775 308 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 ACTBL2Q562R1 376 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 ZNF826PQ6ZT77 177 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 KCTD9Q7L273 389 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 OR10G8Q8NGN5 311 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 OR1S2Q8NGQ3 325 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 OR13A1Q8NGR1 328 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 FAM57AQ8TBR7 257 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 TNFAIP8L1Q8WVP5 186 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 SDSLQ96GA7 329 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 PGAM5Q96HS1 289 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 MRPL37Q9BZE1 423 aaKnown RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 NDEL1Q9GZM8 345 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 PLK3Q9H4B4 646 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 DIABLOQ9NR28 239 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 COA4Q9NYJ1 87 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 PURGQ9UJV8 347 aaKnown RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 LSM4Q9Y4Z0 139 aaKnown RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 SETXQ7Z333 2677 aaKnown RBP1.86□□□□□ -2.11
VPS54-202ENST00000354504 PLCE1Q9P212 2302 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 MYO9AB2RTY4 2548 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 IGKV1OR2-108A0A075B7D4 117 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 NKX2-6A6NCS4 301 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 FAM74A7A6NL05 159 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 SRRM4A7MD48 611 aaKnown RBP1.86□□□□□ -2.11
VPS54-202ENST00000354504 COLCA2A8K830 154 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 DEFB108AA8MXU0 73 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 J3QT63 122 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 UBE2CO00762 179 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 ITGB1BP1O14713 200 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 FOXH1O75593 365 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 LYZL6O75951 148 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 OR5H8P0DN80 308 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 PSG2P11465 335 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 ARR3P36575 388 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 SNCAP37840 140 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 HAAOP46952 286 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 CCL11P51671 97 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 MTCP1P56278 107 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 PPP1CBP62140 327 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 HLA-DRB3P79483 266 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 ADIPOQQ15848 244 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 POU2AF1Q16633 256 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 KRTAP21-3Q3LHN1 58 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 FAM74A3Q4VXF1 159 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 RPL7L1Q6DKI1 246 aaKnown RBP1.86□□□□□ -2.11
VPS54-202ENST00000354504 DHRS7BQ6IAN0 325 aaPredicted RBP1.86□□□□□ -2.11
VPS54-202ENST00000354504 SLC35E4Q6ICL7 350 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 OR2T2Q6IF00 324 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 ALKAL2Q6UX46 152 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 C3P1Q6ZMU1 363 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 SLC25A26Q70HW3 274 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 TBC1D26Q86UD7 250 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 LURAP1LQ8IV03 231 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 ZDHHC23Q8IYP9 409 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 CHST4Q8NCG5 386 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 LY6G5BQ8NDX9 201 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 OR2AJ1Q8NGZ0 328 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 RBPMSQ93062 196 aaKnown RBP1.86□□□□□ -2.11
VPS54-202ENST00000354504 SPTSSAQ969W0 71 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 S100PBPQ96BU1 408 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 C2orf50Q96LR7 162 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 OR4C12Q96R67 309 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 PIMREGQ9BSJ6 248 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 DCTN5Q9BTE1 182 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 QTRT1Q9BXR0 403 aaKnown RBP1.86□□□□□ -2.11
VPS54-202ENST00000354504 OPA3Q9H6K4 179 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms