RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 MSMPQ1L6U9 139 aa18.44■□□□□ 0.54
UPF3A-201ENST00000351487 RFESDQ8TAC1 157 aa18.44■□□□□ 0.54
UPF3A-201ENST00000351487 EDARADDQ8WWZ3 215 aa18.44■□□□□ 0.54
UPF3A-201ENST00000351487 VAX2Q9UIW0 290 aa18.44■□□□□ 0.54
UPF3A-201ENST00000351487 PRRC2CQ9Y520 2896 aaKnown RBP18.44■□□□□ 0.54
UPF3A-201ENST00000351487 ZG16O60844 167 aa18.43■□□□□ 0.54
UPF3A-201ENST00000351487 ZADH2Q8N4Q0 377 aa18.43■□□□□ 0.54
UPF3A-201ENST00000351487 RPP25LQ8N5L8 163 aaKnown RBP18.43■□□□□ 0.54
UPF3A-201ENST00000351487 DCTN5Q9BTE1 182 aa18.43■□□□□ 0.54
UPF3A-201ENST00000351487 WASF3Q9UPY6 502 aa18.43■□□□□ 0.54
UPF3A-201ENST00000351487 IGKV1D-17A0A075B6S4 117 aa18.43■□□□□ 0.54
UPF3A-201ENST00000351487 IFNA1P01562 189 aa18.43■□□□□ 0.54
UPF3A-201ENST00000351487 IGKV1D-33P01593 117 aa18.43■□□□□ 0.54
UPF3A-201ENST00000351487 IGKV1-33P01594 117 aa18.43■□□□□ 0.54
UPF3A-201ENST00000351487 VWC2Q2TAL6 325 aa18.43■□□□□ 0.54
UPF3A-201ENST00000351487 CR1LQ2VPA4 569 aa18.43■□□□□ 0.54
UPF3A-201ENST00000351487 JPT1Q9UK76 154 aa18.43■□□□□ 0.54
UPF3A-201ENST00000351487 LOC400499M0QZD8 3231 aa18.43■□□□□ 0.54
UPF3A-201ENST00000351487 DOCK11Q5JSL3 2073 aa18.43■□□□□ 0.54
UPF3A-201ENST00000351487 MARCH11A6NNE9 402 aa18.42■□□□□ 0.54
UPF3A-201ENST00000351487 GZMHP20718 246 aa18.42■□□□□ 0.54
UPF3A-201ENST00000351487 FABP9Q0Z7S8 132 aa18.42■□□□□ 0.54
UPF3A-201ENST00000351487 OR10P1Q8NGE3 313 aa18.42■□□□□ 0.54
UPF3A-201ENST00000351487 CD55P08174 381 aa18.42■□□□□ 0.54
UPF3A-201ENST00000351487 SMIM6P0DI80 62 aa18.42■□□□□ 0.54
UPF3A-201ENST00000351487 EDDM3AQ14507 147 aa18.42■□□□□ 0.54
UPF3A-201ENST00000351487 Q8WTZ3 238 aa18.42■□□□□ 0.54
UPF3A-201ENST00000351487 ZDHHC16Q969W1 377 aa18.42■□□□□ 0.54
UPF3A-201ENST00000351487 DEFB108AA8MXU0 73 aa18.41■□□□□ 0.54
UPF3A-201ENST00000351487 MGST3O14880 152 aa18.41■□□□□ 0.54
UPF3A-201ENST00000351487 AARDQ4LEZ3 155 aa18.41■□□□□ 0.54
UPF3A-201ENST00000351487 ACSM6Q6P461 480 aa18.41■□□□□ 0.54
UPF3A-201ENST00000351487 IGFL3Q6UXB1 125 aa18.41■□□□□ 0.54
UPF3A-201ENST00000351487 PPP1R35Q8TAP8 253 aa18.41■□□□□ 0.54
UPF3A-201ENST00000351487 SNX22Q96L94 193 aa18.41■□□□□ 0.54
UPF3A-201ENST00000351487 ATXN7O15265 892 aaPredicted RBP18.41■□□□□ 0.54
UPF3A-201ENST00000351487 IGHV3-13P01766 116 aa18.41■□□□□ 0.54
UPF3A-201ENST00000351487 DUTP33316 252 aaKnown RBP18.41■□□□□ 0.54
UPF3A-201ENST00000351487 C3orf36Q3SXR2 165 aa18.41■□□□□ 0.54
UPF3A-201ENST00000351487 TIMM23BQ5SRD1 257 aa18.41■□□□□ 0.54
UPF3A-201ENST00000351487 LRP11Q86VZ4 500 aa18.41■□□□□ 0.54
UPF3A-201ENST00000351487 GCSAMQ8N6F7 178 aa18.41■□□□□ 0.54
UPF3A-201ENST00000351487 SLC39A9Q9NUM3 307 aa18.41■□□□□ 0.54
UPF3A-201ENST00000351487 TTC28Q96AY4 2481 aa18.4■□□□□ 0.54
UPF3A-201ENST00000351487 ZNF318Q5VUA4 2279 aa18.4■□□□□ 0.54
UPF3A-201ENST00000351487 AP4M1O00189 453 aa18.4■□□□□ 0.54
UPF3A-201ENST00000351487 YPEL1O60688 119 aa18.4■□□□□ 0.54
UPF3A-201ENST00000351487 MBP02144 154 aa18.4■□□□□ 0.54
UPF3A-201ENST00000351487 LINC00205P59089 165 aa18.4■□□□□ 0.54
UPF3A-201ENST00000351487 ERVFRD-1P60508 538 aa18.4■□□□□ 0.54
UPF3A-201ENST00000351487 LHX4Q969G2 390 aa18.4■□□□□ 0.54
UPF3A-201ENST00000351487 YPEL2Q96QA6 119 aa18.4■□□□□ 0.54
UPF3A-201ENST00000351487 TMEM242Q9NWH2 141 aa18.4■□□□□ 0.54
UPF3A-201ENST00000351487 EP300Q09472 2414 aaPredicted RBP18.4■□□□□ 0.54
UPF3A-201ENST00000351487 SVILO95425 2214 aa18.4■□□□□ 0.54
UPF3A-201ENST00000351487 FAM90A9PA6NNJ1 464 aa18.39■□□□□ 0.54
UPF3A-201ENST00000351487 PROP1O75360 226 aa18.39■□□□□ 0.54
UPF3A-201ENST00000351487 RPS10P46783 165 aaKnown RBP18.39■□□□□ 0.54
UPF3A-201ENST00000351487 GPR12P47775 334 aa18.39■□□□□ 0.54
UPF3A-201ENST00000351487 GNB2P62879 340 aa18.39■□□□□ 0.54
UPF3A-201ENST00000351487 MORN2Q502X0 79 aa18.39■□□□□ 0.54
UPF3A-201ENST00000351487 NCR3LG1Q68D85 454 aa18.39■□□□□ 0.54
UPF3A-201ENST00000351487 ZNF343Q6P1L6 599 aa18.39■□□□□ 0.54
UPF3A-201ENST00000351487 R3HDM4Q96D70 268 aa18.39■□□□□ 0.54
UPF3A-201ENST00000351487 TCEAL7Q9BRU2 100 aa18.39■□□□□ 0.54
UPF3A-201ENST00000351487 DUSP13Q9UII6 198 aa18.39■□□□□ 0.54
UPF3A-201ENST00000351487 CTXND1A0A1B0GTU2 59 aa18.39■□□□□ 0.53
UPF3A-201ENST00000351487 MDKP21741 143 aaPredicted RBP18.39■□□□□ 0.53
UPF3A-201ENST00000351487 FGF7P21781 194 aa18.39■□□□□ 0.53
UPF3A-201ENST00000351487 ZNF83P51522 516 aa18.39■□□□□ 0.53
UPF3A-201ENST00000351487 RBMS3Q6XE24 437 aaKnown RBP18.39■□□□□ 0.53
UPF3A-201ENST00000351487 HCFC1P51610 2035 aa18.39■□□□□ 0.53
UPF3A-201ENST00000351487 CEBPZOSA8MTT3 80 aa18.38■□□□□ 0.53
UPF3A-201ENST00000351487 CXCL1P09341 107 aa18.38■□□□□ 0.53
UPF3A-201ENST00000351487 S100A12P80511 92 aa18.38■□□□□ 0.53
UPF3A-201ENST00000351487 ZNF474Q6S9Z5 364 aaPredicted RBP18.38■□□□□ 0.53
UPF3A-201ENST00000351487 S100PBPQ96BU1 408 aa18.38■□□□□ 0.53
UPF3A-201ENST00000351487 SDF2L1Q9HCN8 221 aa18.38■□□□□ 0.53
UPF3A-201ENST00000351487 GNG12Q9UBI6 72 aa18.38■□□□□ 0.53
UPF3A-201ENST00000351487 FAM215AQ9Y5M1 114 aa18.38■□□□□ 0.53
UPF3A-201ENST00000351487 F2RL2O00254 374 aa18.38■□□□□ 0.53
UPF3A-201ENST00000351487 RBMXL2O75526 392 aaKnown RBP18.38■□□□□ 0.53
UPF3A-201ENST00000351487 LY86O95711 162 aa18.38■□□□□ 0.53
UPF3A-201ENST00000351487 GLRXP35754 106 aa18.38■□□□□ 0.53
UPF3A-201ENST00000351487 NKX6-1P78426 367 aaPredicted RBP18.38■□□□□ 0.53
UPF3A-201ENST00000351487 MEGF10Q96KG7 1140 aa18.38■□□□□ 0.53
UPF3A-201ENST00000351487 OR2V2Q96R30 315 aa18.38■□□□□ 0.53
UPF3A-201ENST00000351487 NPCDR1Q9BY65 106 aa18.38■□□□□ 0.53
UPF3A-201ENST00000351487 RBFOX2O43251 390 aaKnown RBP eCLIP18.37■□□□□ 0.53
UPF3A-201ENST00000351487 NDUFS6O75380 124 aaKnown RBP18.37■□□□□ 0.53
UPF3A-201ENST00000351487 CYB5R3P00387 301 aaPredicted RBP18.37■□□□□ 0.53
UPF3A-201ENST00000351487 HPRT1P00492 218 aa18.37■□□□□ 0.53
UPF3A-201ENST00000351487 RND2P52198 227 aa18.37■□□□□ 0.53
UPF3A-201ENST00000351487 LOXL3P58215 753 aa18.37■□□□□ 0.53
UPF3A-201ENST00000351487 M0R1B8 84 aa18.37■□□□□ 0.53
UPF3A-201ENST00000351487 NQO2P16083 231 aa18.37■□□□□ 0.53
UPF3A-201ENST00000351487 KLF3P57682 345 aaPredicted RBP18.37■□□□□ 0.53
UPF3A-201ENST00000351487 MEF2BQ02080 365 aaPredicted RBP18.37■□□□□ 0.53
UPF3A-201ENST00000351487 TFF3Q07654 80 aa18.37■□□□□ 0.53
UPF3A-201ENST00000351487 LTC4SQ16873 150 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms