RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 G3V3Y1 287 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 SLC17A3O00476 420 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 ZIC3O60481 467 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 ZFAND5O76080 213 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 TOMM40O96008 361 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 GPX1P07203 203 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 KITLGP21583 273 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 KLF3P57682 345 aaPredicted RBP5.71□□□□□ -1.49
VPS39-202ENST00000348544 Q0VG73 95 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 RAET1LQ5VY80 246 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 UNQ5815/PRO19632Q6UWF5 114 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 FGFRL1Q8N441 504 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 OCC1Q8TAD7 63 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 MTIF3Q9H2K0 278 aaKnown RBP5.71□□□□□ -1.49
VPS39-202ENST00000348544 GNB4Q9HAV0 340 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 KCNIP2Q9NS61 270 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 HSPB7Q9UBY9 170 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 TBL2Q9Y4P3 447 aaKnown RBP5.71□□□□□ -1.49
VPS39-202ENST00000348544 TRIOO75962 3097 aa5.71□□□□□ -1.49
VPS39-202ENST00000348544 TRBV6-6A0A0A6YYG2 114 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 TRAV34A0A0B4J273 112 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 FAM90A26D6RGX4 464 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 K7EN84 100 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 RAMP3O60896 148 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 WDR1O75083 606 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 IGLV3-19P01714 112 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 COL8A2P25067 703 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 FKBP2P26885 142 aaKnown RBP5.71□□□□□ -1.5
VPS39-202ENST00000348544 Q6ZN92 141 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 CADM4Q8NFZ8 388 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 OR5A2Q8NGI9 324 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 OR10G8Q8NGN5 311 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 APOBEC3DQ96AK3 386 aaPredicted RBP5.71□□□□□ -1.5
VPS39-202ENST00000348544 RCHY1Q96PM5 261 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 NRN1Q9NPD7 142 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 UQCR10Q9UDW1 63 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 KCNS2Q9ULS6 477 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 PIGBOS1A0A0B4J2F0 54 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 SCO2A0A1W2PP80 73 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 ZG16O60844 167 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 IGHEP01854 428 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 CELA2AP08217 269 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 P0C879 139 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 IER3P46695 156 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 LGALS4P56470 323 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 ZNF90Q03938 601 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 UBE2V1Q13404 147 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 ATP6V1FQ16864 119 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 VWC2Q2TAL6 325 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 MAJINQ3KP22 176 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 ETFRF1Q6IPR1 90 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 Q6ZS52 159 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 SAXO1Q8IYX7 474 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 DRAM1Q8N682 238 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 SIGLECL1Q8N7X8 197 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 CPT1CQ8TCG5 803 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 APH1AQ96BI3 265 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 CCDC74BQ96LY2 380 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 TMUB1Q9BVT8 246 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 C1QTNF5Q9BXJ0 243 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 ZNF552Q9H707 407 aaPredicted RBP5.71□□□□□ -1.5
VPS39-202ENST00000348544 LIN7CQ9NUP9 197 aaKnown RBP5.71□□□□□ -1.5
VPS39-202ENST00000348544 IL36BQ9NZH7 164 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 CD207Q9UJ71 328 aa5.71□□□□□ -1.5
VPS39-202ENST00000348544 SDK2Q58EX2 2172 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 GTF3C1Q12789 2109 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 A0A1W2PR77 199 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 NPIPB11E5RHQ5 1161 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 LMO7DNF2Z398 122 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 TRAPPC2LH3BP13 241 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 FCN1O00602 326 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 RRHO14718 337 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 G6PCP35575 357 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 HINT1P49773 126 aaPredicted RBP5.7□□□□□ -1.5
VPS39-202ENST00000348544 HNRNPA3P51991 378 aaKnown RBP5.7□□□□□ -1.5
VPS39-202ENST00000348544 SUMO1P63165 101 aaKnown RBP5.7□□□□□ -1.5
VPS39-202ENST00000348544 CEACAM16Q2WEN9 425 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 AARDQ4LEZ3 155 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 SPINK9Q5DT21 86 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 PLXDC1Q8IUK5 500 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 OR2M7Q8NG81 312 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 STARD4Q96DR4 205 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 TXN2Q99757 166 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 FOXB1Q99853 325 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 ALKBH7Q9BT30 221 aaPredicted RBP5.7□□□□□ -1.5
VPS39-202ENST00000348544 QTRT1Q9BXR0 403 aaKnown RBP5.7□□□□□ -1.5
VPS39-202ENST00000348544 PROK2Q9HC23 129 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 ZNF586Q9NXT0 402 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 ODAMA1E959 279 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 LRP5LA4QPB2 252 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 SNURFLB1AK76 121 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 SIRPB1O00241 398 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 DEGS1O15121 323 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 MMP23AO75900 390 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 SERPINA7P05543 415 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 CCL3P10147 92 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 CCL2P13500 99 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 IGFBP7Q16270 282 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 FBXO46Q6PJ61 603 aaPredicted RBP5.7□□□□□ -1.5
VPS39-202ENST00000348544 COLCA1Q6ZS62 124 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms