RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 IFNA17P01571 189 aa8.61□□□□□ -1.03
LIMA1-201ENST00000341247 SLC25A6P12236 298 aa8.61□□□□□ -1.03
LIMA1-201ENST00000341247 RAB2AP61019 212 aa8.61□□□□□ -1.03
LIMA1-201ENST00000341247 MSMO1Q15800 293 aa8.61□□□□□ -1.03
LIMA1-201ENST00000341247 ZNF726P1Q15940 193 aa8.61□□□□□ -1.03
LIMA1-201ENST00000341247 SNRNP40Q96DI7 357 aaKnown RBP8.61□□□□□ -1.03
LIMA1-201ENST00000341247 MRPL37Q9BZE1 423 aaKnown RBP8.61□□□□□ -1.03
LIMA1-201ENST00000341247 KIAA1456Q9P272 454 aa8.61□□□□□ -1.03
LIMA1-201ENST00000341247 HRNRQ86YZ3 2850 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-201ENST00000341247 DSCAMO60469 2012 aa8.61□□□□□ -1.03
LIMA1-201ENST00000341247 LRRC30A6NM36 301 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 SLC31A2O15432 143 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 ZNF737O75373 536 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 SRP19P09132 144 aaKnown RBP8.6□□□□□ -1.03
LIMA1-201ENST00000341247 SNRPEP62304 92 aaKnown RBP8.6□□□□□ -1.03
LIMA1-201ENST00000341247 Q6ZS92 163 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 DTD1Q8TEA8 209 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 MEGF10Q96KG7 1140 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 SLC25A22Q9H936 323 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 CELSR1Q9NYQ6 3014 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 SRRM5B3KS81 715 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 C15orf65H3BRN8 121 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 PROP1O75360 226 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 TAGLN2P37802 199 aaKnown RBP8.6□□□□□ -1.03
LIMA1-201ENST00000341247 ZNF134P52741 427 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 ZNF343Q6P1L6 599 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 ZNF429Q86V71 674 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 WFDC8Q8IUA0 241 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 CLDND2Q8NHS1 167 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 RAB39BQ96DA2 213 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 RCC1LQ96I51 464 aaKnown RBP8.6□□□□□ -1.03
LIMA1-201ENST00000341247 QTRT1Q9BXR0 403 aaKnown RBP8.6□□□□□ -1.03
LIMA1-201ENST00000341247 TMPRSS5Q9H3S3 457 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-201ENST00000341247 WASF3Q9UPY6 502 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 ITPR1Q14643 2758 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 MARCH11A6NNE9 402 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 CEACAM1P13688 526 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 CD200P41217 278 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 CCL8P80075 99 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 TFF3Q07654 80 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 HABP2Q14520 560 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-201ENST00000341247 TIMM23BQ5SRD1 257 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 ABHD17AQ96GS6 310 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 AGMATQ9BSE5 352 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 WDR61Q9GZS3 305 aaKnown RBP8.6□□□□□ -1.03
LIMA1-201ENST00000341247 ATRXP46100 2492 aa8.6□□□□□ -1.03
LIMA1-201ENST00000341247 SMCO3A2RU48 225 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 C1QTNF9BB2RNN3 333 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 OR9G9P0C7N8 305 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 GNG10P50151 68 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 PRR7Q8TB68 274 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 R3HDM4Q96D70 268 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 ZNRD1Q9P1U0 126 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 CSMD2Q7Z408 3487 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 IFNL4K9M1U5 179 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 OR2C1O95371 312 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 CLDN14O95500 239 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 IGKV1D-33P01593 117 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 IGKV1-33P01594 117 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 LRRC75BQ2VPJ9 315 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 TAF15Q92804 592 aaKnown RBP eCLIP8.59□□□□□ -1.03
LIMA1-201ENST00000341247 CCL13Q99616 98 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 HCFC1P51610 2035 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 TRAV3A0A0B4J244 114 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 GYPAP02724 150 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 FGF7P21781 194 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 DLK1P80370 383 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 LURAP1Q96LR2 239 aa8.59□□□□□ -1.03
LIMA1-201ENST00000341247 C1orf196B1AJZ1 125 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 ACAA1P09110 424 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-201ENST00000341247 GLRXP35754 106 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 EIF2S3P41091 472 aaKnown RBP8.58□□□□□ -1.04
LIMA1-201ENST00000341247 RAB5BP61020 215 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 RPS23P62266 143 aaKnown RBP8.58□□□□□ -1.04
LIMA1-201ENST00000341247 TNFAIP6P98066 277 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-201ENST00000341247 ZNF674Q2M3X9 581 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 MORN2Q502X0 79 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 PRAMEF5Q5TYX0 476 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 C1orf229Q6ZS94 237 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-201ENST00000341247 FAM216BQ8N7L0 139 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 C15orf54Q8N8G6 183 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 HSPB7Q9UBY9 170 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 TNCP24821 2201 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 MAP1LC3B2A6NCE7 125 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 S100A6P06703 90 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 FOXC1Q12948 553 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 EIF4EBP1Q13541 118 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-201ENST00000341247 ACSM6Q6P461 480 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 ZBTB34Q8NCN2 500 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 OR10P1Q8NGE3 313 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 GATAD1Q8WUU5 269 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 LHX4Q969G2 390 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 HINT2Q9BX68 163 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 MAP1LC3BQ9GZQ8 125 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 BIN3Q9NQY0 253 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 SLC39A9Q9NUM3 307 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 TP53TG5Q9Y2B4 290 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 ABCA4P78363 2273 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 MGST3O14880 152 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms