RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SLC17A3O00476 420 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 LSM6P62312 80 aaKnown RBP7.51□□□□□ -1.21
RTN3-202ENST00000339997 TEPPQ6URK8 271 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 FGFRL1Q8N441 504 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 SLC25A33Q9BSK2 321 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 TMUB1Q9BVT8 246 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 GPR35Q9HC97 309 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 TUBD1Q9UJT1 453 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 PXMP4Q9Y6I8 212 aa7.51□□□□□ -1.21
RTN3-202ENST00000339997 CFAP47Q6ZTR5 3102 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 hADV38S2A0JD32 116 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 GAGE10A6NGK3 116 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 NPIPB8E9PQR5 432 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 IL9P15248 144 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 CRYBB3P26998 211 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 RBM11P57052 281 aaKnown RBP7.5□□□□□ -1.21
RTN3-202ENST00000339997 DOLPP1Q86YN1 238 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 WDFY1Q8IWB7 410 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 H1FOOQ8IZA3 346 aaPredicted RBP7.5□□□□□ -1.21
RTN3-202ENST00000339997 OR1L1Q8NH94 360 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 FAM131CQ96AQ9 280 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 SMG1Q96Q15 3661 aaKnown RBP7.5□□□□□ -1.21
RTN3-202ENST00000339997 M0R3E3 92 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 SMPD2O60906 423 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 AGAP20933 346 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 SRD5A2P31213 254 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 ATP6V1FQ16864 119 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 PET117Q6UWS5 81 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 KMT5CQ86Y97 462 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 FAM19A2Q8N3H0 131 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 ZNF721Q8TF20 911 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 KCNS1Q96KK3 526 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 MRPL18Q9H0U6 180 aaKnown RBP7.5□□□□□ -1.21
RTN3-202ENST00000339997 PARLQ9H300 379 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 RNF122Q9H9V4 155 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 KIAA1217Q5T5P2 1943 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 IGHV3OR16-13A0A075B7E8 117 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 IGHV3-74A0A0B4J1X5 117 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 CYC1P08574 325 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 TNFRSF1AP19438 455 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 FCARP24071 287 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 RAB9AP51151 201 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 C19orf54Q5BKX5 351 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 TMEM211Q6ICI0 200 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 OR8B3Q8NGG8 313 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 PMCHL2Q9BQD1 86 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 SEBOXQ9HB31 216 aaPredicted RBP7.5□□□□□ -1.21
RTN3-202ENST00000339997 TMEM38BQ9NVV0 291 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 LHFPL6Q9Y693 200 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 IGKV1D-43A0A0B4J1Z2 117 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 A0A1W2PN81 502 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 A0A1W2PQF6 199 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 RPL36A-HNRNPH2H7BZ11 118 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 K7ERU9 68 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 K7ESF4 209 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 GNG7O60262 68 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 ZNF324O75467 553 aaPredicted RBP7.5□□□□□ -1.21
RTN3-202ENST00000339997 MGPP08493 103 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 KLF3P57682 345 aaPredicted RBP7.5□□□□□ -1.21
RTN3-202ENST00000339997 TIMP4Q99727 224 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 TMEM222Q9H0R3 208 aa7.5□□□□□ -1.21
RTN3-202ENST00000339997 IGLV1-36A0A0B4J1U3 117 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 A0A1B0GU03 582 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 PROB1E7EW31 1015 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 RRHO14718 337 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 CA2P00918 260 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 REG1AP05451 166 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 BTF3P20290 206 aaKnown RBP7.49□□□□□ -1.21
RTN3-202ENST00000339997 CACNG7P62955 275 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 PLAURQ03405 335 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 VAX1Q5SQQ9 334 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 TMEM183AQ8IXX5 376 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 SHISA5Q8N114 240 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 CADM4Q8NFZ8 388 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 TAF15Q92804 592 aaKnown RBP eCLIP7.49□□□□□ -1.21
RTN3-202ENST00000339997 ASCL3Q9NQ33 180 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 TMEM167BQ9NRX6 74 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 IGKV1D-42A0A075B6H8 117 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 A0A0G2JK05 382 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 M0QZK8 103 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 GGCTO75223 188 aaKnown RBP7.49□□□□□ -1.21
RTN3-202ENST00000339997 DXOO77932 396 aaKnown RBP7.49□□□□□ -1.21
RTN3-202ENST00000339997 HIST1H1BP16401 226 aaKnown RBP7.49□□□□□ -1.21
RTN3-202ENST00000339997 RNFT1Q5M7Z0 435 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 IBA57Q5T440 356 aaKnown RBP7.49□□□□□ -1.21
RTN3-202ENST00000339997 C10orf113Q5VZT2 155 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 SFTA2Q6UW10 78 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 GFRALQ6UXV0 394 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 MDP1Q86V88 176 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 OR8G5Q8NG78 346 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 PGLYRP4Q96LB8 373 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 IGKV3D-15A0A087WSY6 115 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 IGKV3-15P01624 115 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 RNASE1P07998 156 aaKnown RBP7.49□□□□□ -1.21
RTN3-202ENST00000339997 TFPI2P48307 235 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 PAFAH1B2P68402 229 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 ZNF818PQ6ZRF7 136 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 MPC1Q9Y5U8 109 aa7.49□□□□□ -1.21
RTN3-202ENST00000339997 SONP18583 2426 aaKnown RBP7.49□□□□□ -1.21
RTN3-202ENST00000339997 RNF222A6NCQ9 220 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms