RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 FBXW9Q5XUX1 488 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 ACSM6Q6P461 480 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 LHFPL4Q7Z7J7 247 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 ABHD12Q8N2K0 398 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 OR10A7Q8NGE5 316 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 VN1R17PQ8TDU5 208 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 PCGF1Q9BSM1 259 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 ZNF703Q9H7S9 590 aaPredicted RBP10.12□□□□□ -0.79
USP1-201ENST00000339950 METRNQ9UJH8 293 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 TUBD1Q9UJT1 453 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 SPINT2O43291 252 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 COL8A2P25067 703 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 PTTG1IPP53801 180 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 B3GALT5-AS1P59052 145 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 ST6GALNAC3Q8NDV1 305 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 TMEM9BQ9NQ34 198 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 C17orf98A8MV24 154 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 MDH2P40926 338 aaKnown RBP10.12□□□□□ -0.79
USP1-201ENST00000339950 TFF3Q07654 80 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 PRR27Q6MZM9 219 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 MOGAT3Q86VF5 341 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 TMEM178AQ8NBL3 297 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 FAM122AQ96E09 287 aa10.12□□□□□ -0.79
USP1-201ENST00000339950 DCHS1Q96JQ0 3298 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 WFDC8Q8IUA0 241 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 UBALD2Q8IYN6 164 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 GALNT14Q96FL9 552 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 RCC1LQ96I51 464 aaKnown RBP10.11□□□□□ -0.79
USP1-201ENST00000339950 VAMP8Q9BV40 100 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 GOLT1BQ9Y3E0 138 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 CSPG4Q6UVK1 2322 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 OR7C2O60412 319 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 RNFT1Q5M7Z0 435 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 ASPHD1Q5U4P2 390 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 MRPL30Q8TCC3 161 aaKnown RBP10.11□□□□□ -0.79
USP1-201ENST00000339950 MISP3Q96FF7 219 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 C18orf12Q96KH6 178 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 LRFN3Q9BTN0 628 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 ZNF71Q9NQZ8 489 aaPredicted RBP10.11□□□□□ -0.79
USP1-201ENST00000339950 J3QT63 122 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 PSPNO60542 156 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 RAB4AP20338 218 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 LHX2P50458 406 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 COL10A1Q03692 680 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 IL24Q13007 206 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 TMEM241Q24JQ0 296 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 BSXQ3C1V8 233 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 RPL39P5Q59GN2 51 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 ACY3Q96HD9 319 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 TBX15Q96SF7 602 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 GINS3Q9BRX5 216 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 FGF23Q9GZV9 251 aaPredicted RBP10.11□□□□□ -0.79
USP1-201ENST00000339950 FKBP11Q9NYL4 201 aa10.11□□□□□ -0.79
USP1-201ENST00000339950 TMEM30CPA0ZSE6 113 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 SLC31A2O15432 143 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 PSG7Q13046 419 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 C16orf82Q7Z2V1 217 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 RAB40CQ96S21 281 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 SETD2Q9BYW2 2564 aaPredicted RBP10.1□□□□□ -0.79
USP1-201ENST00000339950 LOC102723996A0A087X1L8 192 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 IGLV3-32A0A0A0MS00 114 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 A8MXE2 369 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 APOA2P02652 100 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 SRP19P09132 144 aaKnown RBP10.1□□□□□ -0.79
USP1-201ENST00000339950 OTX1P32242 354 aaPredicted RBP10.1□□□□□ -0.79
USP1-201ENST00000339950 CLDN18P56856 261 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 CCL8P80075 99 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 TRA2AQ13595 282 aaKnown RBP eCLIP10.1□□□□□ -0.799e-6■□□□□ 11
USP1-201ENST00000339950 DDA1Q9BW61 102 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 RNF122Q9H9V4 155 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 A0A1W2PRD5 423 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 A0A1W2PRF3 423 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 A0A1W2PRM7 423 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 PITX3O75364 302 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 PLAUP00749 431 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 Q6ZPA2 131 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 SIGLECL1Q8N7X8 197 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 KLF14Q8TD94 323 aaPredicted RBP10.1□□□□□ -0.79
USP1-201ENST00000339950 BORCS7Q96B45 105 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 KIAA1456Q9P272 454 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 CLCF1Q9UBD9 225 aa10.1□□□□□ -0.79
USP1-201ENST00000339950 C1QTNF9BB2RNN3 333 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 GALR2O43603 387 aaPredicted RBP10.09□□□□□ -0.79
USP1-201ENST00000339950 MYOD1P15172 320 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 GATA2P23769 480 aaPredicted RBP10.09□□□□□ -0.79
USP1-201ENST00000339950 SELENOVP59797 346 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 DMRTA1Q5VZB9 504 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 FDCSPQ8NFU4 85 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 GTF3AQ92664 365 aaKnown RBP10.09□□□□□ -0.79
USP1-201ENST00000339950 C10orf35Q96D05 121 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 POM121L2Q96KW2 1035 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 C12orf77C9JDV5 145 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 K7N7A8 449 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 NDUFB4O95168 129 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 UCP2P55851 309 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 PAX5Q02548 391 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 CRIP3Q6Q6R5 217 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 ERASQ7Z444 233 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 OR5P3Q8WZ94 311 aa10.09□□□□□ -0.79
USP1-201ENST00000339950 MUCL1Q96DR8 90 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms