RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 H0YJW9 148 aa17.79■□□□□ 0.44
SDC3-202ENST00000339394 VENTXO95231 258 aa17.79■□□□□ 0.44
SDC3-202ENST00000339394 SNRNP70P08621 437 aaKnown RBP17.79■□□□□ 0.44
SDC3-202ENST00000339394 FAM106CPP0CH98 169 aa17.79■□□□□ 0.44
SDC3-202ENST00000339394 BTCP35070 178 aa17.79■□□□□ 0.44
SDC3-202ENST00000339394 THBS3P49746 956 aa17.79■□□□□ 0.44
SDC3-202ENST00000339394 CCR6P51684 374 aa17.79■□□□□ 0.44
SDC3-202ENST00000339394 RPL30P62888 115 aaKnown RBP17.79■□□□□ 0.44
SDC3-202ENST00000339394 SURF2Q15527 256 aaPredicted RBP17.79■□□□□ 0.44
SDC3-202ENST00000339394 SLC9A3R2Q15599 337 aa17.79■□□□□ 0.44
SDC3-202ENST00000339394 PHLDA2Q53GA4 152 aa17.79■□□□□ 0.44
SDC3-202ENST00000339394 FBLN7Q53RD9 439 aa17.79■□□□□ 0.44
SDC3-202ENST00000339394 ZNF66Q6ZN08 573 aa17.79■□□□□ 0.44
SDC3-202ENST00000339394 THNSL2Q86YJ6 484 aa17.79■□□□□ 0.44
SDC3-202ENST00000339394 GPR132Q9UNW8 380 aa17.79■□□□□ 0.44
SDC3-202ENST00000339394 POMT1Q9Y6A1 747 aa17.79■□□□□ 0.44
SDC3-202ENST00000339394 IGKV1D-33P01593 117 aa17.78■□□□□ 0.44
SDC3-202ENST00000339394 IGKV1-33P01594 117 aa17.78■□□□□ 0.44
SDC3-202ENST00000339394 LY6EQ16553 131 aa17.78■□□□□ 0.44
SDC3-202ENST00000339394 ZDHHC22Q8N966 263 aa17.78■□□□□ 0.44
SDC3-202ENST00000339394 ZFAND1Q8TCF1 268 aa17.78■□□□□ 0.44
SDC3-202ENST00000339394 DDB2Q92466 427 aa17.78■□□□□ 0.44
SDC3-202ENST00000339394 ZNF486Q96H40 463 aaPredicted RBP17.78■□□□□ 0.44
SDC3-202ENST00000339394 ADTRPQ96IZ2 230 aa17.78■□□□□ 0.44
SDC3-202ENST00000339394 SLC2A9Q9NRM0 540 aa17.78■□□□□ 0.44
SDC3-202ENST00000339394 TCF19Q9Y242 345 aa17.78■□□□□ 0.44
SDC3-202ENST00000339394 SETD2Q9BYW2 2564 aaPredicted RBP17.77■□□□□ 0.44
SDC3-202ENST00000339394 BTBD17A6NE02 478 aa17.77■□□□□ 0.44
SDC3-202ENST00000339394 DNAJC9-AS1A6NH13 148 aa17.77■□□□□ 0.44
SDC3-202ENST00000339394 TCF21O43680 179 aa17.77■□□□□ 0.44
SDC3-202ENST00000339394 PGLYRP1O75594 196 aaPredicted RBP17.77■□□□□ 0.44
SDC3-202ENST00000339394 MC5RP33032 325 aa17.77■□□□□ 0.44
SDC3-202ENST00000339394 ASAH1Q13510 395 aa17.77■□□□□ 0.44
SDC3-202ENST00000339394 HES1Q14469 280 aa17.77■□□□□ 0.44
SDC3-202ENST00000339394 C16orf87Q6PH81 154 aa17.77■□□□□ 0.44
SDC3-202ENST00000339394 CCBE1Q6UXH8 406 aaPredicted RBP17.77■□□□□ 0.44
SDC3-202ENST00000339394 KCTD9Q7L273 389 aa17.77■□□□□ 0.44
SDC3-202ENST00000339394 TMEM86BQ8N661 226 aa17.77■□□□□ 0.44
SDC3-202ENST00000339394 SLC25A21Q9BQT8 299 aaPredicted RBP17.77■□□□□ 0.44
SDC3-202ENST00000339394 C5orf66Q9H5L9 145 aa17.77■□□□□ 0.44
SDC3-202ENST00000339394 CTSDP07339 412 aaPredicted RBP17.76■□□□□ 0.43
SDC3-202ENST00000339394 EBI3Q14213 229 aa17.76■□□□□ 0.43
SDC3-202ENST00000339394 HNF4GQ14541 408 aa17.76■□□□□ 0.43
SDC3-202ENST00000339394 ABCA11PQ4W5N1 156 aa17.76■□□□□ 0.43
SDC3-202ENST00000339394 TCTEX1D2Q8WW35 142 aa17.76■□□□□ 0.43
SDC3-202ENST00000339394 SCGB3A2Q96PL1 93 aa17.76■□□□□ 0.43
SDC3-202ENST00000339394 RTBDNQ9BSG5 229 aaPredicted RBP17.76■□□□□ 0.43
SDC3-202ENST00000339394 CHIAQ9BZP6 476 aa17.76■□□□□ 0.43
SDC3-202ENST00000339394 VPREB3Q9UKI3 123 aa17.76■□□□□ 0.43
SDC3-202ENST00000339394 VSIG4Q9Y279 399 aa17.76■□□□□ 0.43
SDC3-202ENST00000339394 A0A0A6YYJ9 748 aa17.75■□□□□ 0.43
SDC3-202ENST00000339394 CLDN34H7C241 214 aa17.75■□□□□ 0.43
SDC3-202ENST00000339394 H7C2Y5 167 aa17.75■□□□□ 0.43
SDC3-202ENST00000339394 APOA2P02652 100 aa17.75■□□□□ 0.43
SDC3-202ENST00000339394 IGKV1-16P04430 117 aa17.75■□□□□ 0.43
SDC3-202ENST00000339394 RLN1P04808 185 aa17.75■□□□□ 0.43
SDC3-202ENST00000339394 PIGPP57054 158 aa17.75■□□□□ 0.43
SDC3-202ENST00000339394 TAGLNQ01995 201 aaKnown RBP17.75■□□□□ 0.43
SDC3-202ENST00000339394 RBMS2Q15434 407 aaKnown RBP17.75■□□□□ 0.43
SDC3-202ENST00000339394 OR51H1Q8NH63 302 aa17.75■□□□□ 0.43
SDC3-202ENST00000339394 EAF1Q96JC9 268 aaPredicted RBP17.75■□□□□ 0.43
SDC3-202ENST00000339394 JMJD8Q96S16 334 aa17.75■□□□□ 0.43
SDC3-202ENST00000339394 SLC35D1Q9NTN3 355 aa17.75■□□□□ 0.43
SDC3-202ENST00000339394 WASHC3Q9Y3C0 194 aa17.75■□□□□ 0.43
SDC3-202ENST00000339394 A6NDX4 124 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 MOSP00540 346 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 IFNA2P01563 188 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 S100GP29377 79 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 BRWD1-AS2P59051 145 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 TMEM219Q86XT9 240 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 OR2T10Q8NGZ9 312 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 RITA1Q96K30 269 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 PITPNC1Q9UKF7 332 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 C14orf166Q9Y224 244 aaKnown RBP17.74■□□□□ 0.43
SDC3-202ENST00000339394 PRELID3BQ9Y3B1 194 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 TMEM11P17152 192 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 SLC6A1P30531 599 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 CATR1Q13166 79 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 OR2B11Q5JQS5 317 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 TBC1D26Q86UD7 250 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 PDPNQ86YL7 162 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 COPZ2Q9P299 210 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 JMJD1CQ15652 2540 aa17.74■□□□□ 0.43
SDC3-202ENST00000339394 MPPED1O15442 326 aa17.73■□□□□ 0.43
SDC3-202ENST00000339394 FCGR3BO75015 233 aa17.73■□□□□ 0.43
SDC3-202ENST00000339394 NDUFB6O95139 128 aa17.73■□□□□ 0.43
SDC3-202ENST00000339394 RND3P61587 244 aa17.73■□□□□ 0.43
SDC3-202ENST00000339394 RTL8BQ17RB0 113 aa17.73■□□□□ 0.43
SDC3-202ENST00000339394 MZT2BQ6NZ67 158 aa17.73■□□□□ 0.43
SDC3-202ENST00000339394 Q8N6K4 173 aa17.73■□□□□ 0.43
SDC3-202ENST00000339394 RNF212BA8MTL3 300 aa17.72■□□□□ 0.43
SDC3-202ENST00000339394 RRASP10301 218 aa17.72■□□□□ 0.43
SDC3-202ENST00000339394 F2RP25116 425 aa17.72■□□□□ 0.43
SDC3-202ENST00000339394 UBA52P62987 128 aaKnown RBP17.72■□□□□ 0.43
SDC3-202ENST00000339394 OR4C13Q8NGP0 309 aa17.72■□□□□ 0.43
SDC3-202ENST00000339394 FLYWCH2Q96CP2 140 aaKnown RBP17.72■□□□□ 0.43
SDC3-202ENST00000339394 FAM240BA0A1B0GVZ2 78 aa17.71■□□□□ 0.43
SDC3-202ENST00000339394 RAMP3O60896 148 aa17.71■□□□□ 0.43
SDC3-202ENST00000339394 DEFA1P59665 94 aa17.71■□□□□ 0.43
SDC3-202ENST00000339394 DEFA3P59666 94 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms