RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 TRBV2A0A0J9YWF9 115 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 A0A1B0GWA3 101 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 ELOVL7A1L3X0 281 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 C7orf66A4D0T2 115 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 GLOD5A6NK44 160 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 MARCH11A6NNE9 402 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 FOXI3A8MTJ6 420 aaPredicted RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 H0Y8G0 127 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 SPINT2O43291 252 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 TRMUO75648 421 aaKnown RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 BPNT1O95861 308 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 IL1AP01583 271 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 CDK1P06493 297 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 PIRTP0C851 137 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 GABRR1P24046 479 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 HTR2AP28223 471 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 NPBWR2P48146 333 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 FOXG1P55316 489 aaPredicted RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 OR2B6P58173 313 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 GNG3P63215 75 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 SRSF2Q01130 221 aaKnown RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 MED21Q13503 144 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 EIF4EBP1Q13541 118 aaPredicted RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 PMS2P11Q13670 270 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 ZNF266Q14584 549 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 OR1Q1Q15612 314 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 BSXQ3C1V8 233 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 NXNL2Q5VZ03 156 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 OR8G2PQ6IF36 304 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 UQCC3Q6UW78 93 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 ADAMTSL5Q6ZMM2 481 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 ZNF813Q6ZN06 617 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 PLEKHG7Q6ZR37 379 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 SLC16A9Q7RTY1 509 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 CMC1Q7Z7K0 106 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 DHDDSQ86SQ9 333 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 MKXQ8IYA7 352 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 TMCO5AQ8N6Q1 288 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 Q8N976 141 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 CLRN3Q8NCR9 226 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 DUSP18Q8NEJ0 188 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 OR11H7Q8NGC8 314 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 OR4A15Q8NGL6 344 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 OR6F1Q8NGZ6 308 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 OR52N1Q8NH53 320 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 LYPD6BQ8NI32 183 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 RNASEH2CQ8TDP1 164 aaKnown RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 AQP3Q92482 292 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 SNAPC3Q92966 411 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 MUL1Q969V5 352 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 AURKBQ96GD4 344 aaPredicted RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 ZNF486Q96H40 463 aaPredicted RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 PYURFQ96I23 114 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 TEX12Q9BXU0 123 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 NUF2Q9BZD4 464 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 NARFLQ9H6Q4 476 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 ONECUT1Q9UBC0 465 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 DUSP13Q9UII6 198 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 HSF4Q9ULV5 492 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 GTF2A1LQ9UNN4 478 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 RHBDD3Q9Y3P4 386 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 RNF213Q63HN8 5207 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 IGKV1D-17A0A075B6S4 117 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 TRBV5-7A0A0A0MS05 114 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 TRBV5-5A0A0J9YX44 114 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 CCDC182A6NF36 153 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 SNTNA6NMZ2 147 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 FNDC10F2Z333 226 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 RFXANKO14593 260 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 PHOX2AO14813 284 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 OGG1O15527 345 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 NOL3O60936 208 aaKnown RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 ZNF253O75346 499 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 NME6O75414 186 aaPredicted RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 CRTAPO75718 401 aaPredicted RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 NXPH4O95158 308 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 CSTAP01040 98 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 S100A8P05109 93 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 S100A9P06702 114 aaKnown RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 CHRNGP07510 517 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 CT45A10P0DMU9 189 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 IGFBP3P17936 291 aaPredicted RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 GZMHP20718 246 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 GABRA3P34903 492 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 SERPINB10P48595 397 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 ZNF121P58317 390 aaPredicted RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 VBP1P61758 197 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 COPZ1P61923 177 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 ACTA2P62736 377 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 VAMP2P63027 116 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 ACTG2P63267 376 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 KRR1Q13601 381 aaKnown RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 RSPO1Q2MKA7 263 aaPredicted RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 ZIK1Q3SY52 487 aaPredicted RBP1.02□□□□□ -2.25
LINC00643-201ENST00000334389 ANXA2RQ3ZCQ2 193 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 CDNFQ49AH0 187 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 TP53I3Q53FA7 332 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 LINC01590Q5TEZ4 76 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 PXDC1Q5TGL8 231 aa1.02□□□□□ -2.25
LINC00643-201ENST00000334389 MROH9Q5TGP6 573 aa1.02□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms