RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 VAX2Q9UIW0 290 aa13.39□□□□□ -0.27
USH1C-202ENST00000318024 H3BP45 60 aa13.38□□□□□ -0.27
USH1C-202ENST00000318024 IFNA5P01569 189 aa13.38□□□□□ -0.27
USH1C-202ENST00000318024 F2RP25116 425 aa13.38□□□□□ -0.27
USH1C-202ENST00000318024 HOXC12P31275 282 aa13.38□□□□□ -0.27
USH1C-202ENST00000318024 TIMP3P35625 211 aa13.38□□□□□ -0.27
USH1C-202ENST00000318024 SPCS3P61009 180 aa13.38□□□□□ -0.27
USH1C-202ENST00000318024 TMEM267Q0VDI3 215 aaPredicted RBP13.38□□□□□ -0.27
USH1C-202ENST00000318024 LCN15Q6UWW0 184 aa13.38□□□□□ -0.27
USH1C-202ENST00000318024 MRGPRGQ86SM5 289 aa13.38□□□□□ -0.27
USH1C-202ENST00000318024 BATF2Q8N1L9 274 aa13.38□□□□□ -0.27
USH1C-202ENST00000318024 WDR31Q8NA23 367 aa13.38□□□□□ -0.27
USH1C-202ENST00000318024 NDUFAF3Q9BU61 184 aa13.38□□□□□ -0.27
USH1C-202ENST00000318024 REPIN1Q9BWE0 567 aaKnown RBP13.38□□□□□ -0.27
USH1C-202ENST00000318024 TPRP12270 2363 aaKnown RBP13.38□□□□□ -0.27
USH1C-202ENST00000318024 A0A1B0GWJ7 208 aa13.37□□□□□ -0.27
USH1C-202ENST00000318024 GZMHP20718 246 aa13.37□□□□□ -0.27
USH1C-202ENST00000318024 FGF8P55075 233 aaPredicted RBP13.37□□□□□ -0.27
USH1C-202ENST00000318024 TGIF2LYQ8IUE0 185 aa13.37□□□□□ -0.27
USH1C-202ENST00000318024 C17orf78Q8N4C9 275 aa13.37□□□□□ -0.27
USH1C-202ENST00000318024 OR56B2PQ8NGI1 322 aa13.37□□□□□ -0.27
USH1C-202ENST00000318024 RNF150Q9ULK6 438 aa13.37□□□□□ -0.27
USH1C-202ENST00000318024 ATP23Q9Y6H3 246 aa13.37□□□□□ -0.27
USH1C-202ENST00000318024 CACNA1AO00555 2505 aa13.37□□□□□ -0.27
USH1C-202ENST00000318024 BCL3P20749 454 aa13.37□□□□□ -0.27
USH1C-202ENST00000318024 TBC1D28Q2M2D7 210 aa13.37□□□□□ -0.27
USH1C-202ENST00000318024 LRRC75BQ2VPJ9 315 aa13.37□□□□□ -0.27
USH1C-202ENST00000318024 CYP2G1PQ6ZSU1 146 aa13.37□□□□□ -0.27
USH1C-202ENST00000318024 MRPL21Q7Z2W9 205 aaKnown RBP13.37□□□□□ -0.27
USH1C-202ENST00000318024 OR51G1Q8NGK1 321 aa13.37□□□□□ -0.27
USH1C-202ENST00000318024 PARD6GQ9BYG4 376 aaPredicted RBP13.37□□□□□ -0.27
USH1C-202ENST00000318024 ITPR1Q14643 2758 aa13.36□□□□□ -0.27
USH1C-202ENST00000318024 IGKV1-39P01597 117 aa13.36□□□□□ -0.27
USH1C-202ENST00000318024 IGKV1D-39P04432 117 aa13.36□□□□□ -0.27
USH1C-202ENST00000318024 MDH2P40926 338 aaKnown RBP13.36□□□□□ -0.27
USH1C-202ENST00000318024 BPIFB3P59826 476 aa13.36□□□□□ -0.27
USH1C-202ENST00000318024 FGF12P61328 243 aa13.36□□□□□ -0.27
USH1C-202ENST00000318024 ERVS71-1P61550 626 aa13.36□□□□□ -0.27
USH1C-202ENST00000318024 SERF2P84101 59 aa13.36□□□□□ -0.27
USH1C-202ENST00000318024 CTXN2P0C2S0 81 aa13.36□□□□□ -0.27
USH1C-202ENST00000318024 CEACAM8P31997 349 aaPredicted RBP13.36□□□□□ -0.27
USH1C-202ENST00000318024 BHLHA15Q7RTS1 189 aaPredicted RBP13.36□□□□□ -0.27
USH1C-202ENST00000318024 C16orf82Q7Z2V1 217 aa13.36□□□□□ -0.27
USH1C-202ENST00000318024 HIST1H2AAQ96QV6 131 aa13.36□□□□□ -0.27
USH1C-202ENST00000318024 RBKSQ9H477 322 aa13.36□□□□□ -0.27
USH1C-202ENST00000318024 NAT8Q9UHE5 227 aa13.36□□□□□ -0.27
USH1C-202ENST00000318024 A0A0G2JNJ9 132 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 KIR2DS1A0A191URI9 304 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 TNFSF12O43508 249 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 LILRA1O75019 489 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 SNRPCP09234 159 aaKnown RBP13.35□□□□□ -0.27
USH1C-202ENST00000318024 KIR2DS4P43632 304 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 KIR2DS1Q14954 304 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 P2RY6Q15077 328 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 SSX2Q16385 188 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 IZUMO4Q1ZYL8 232 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 SAXO1Q8IYX7 474 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 SVIPQ8NHG7 77 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 FAM122AQ96E09 287 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 IL36RNQ9UBH0 155 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 Q9UFV3 132 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 GCGP01275 180 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 LY6DQ14210 128 aa13.35□□□□□ -0.27
USH1C-202ENST00000318024 TRBV6-6A0A0A6YYG2 114 aa13.34□□□□□ -0.27
USH1C-202ENST00000318024 CEBPZOSA8MTT3 80 aa13.34□□□□□ -0.27
USH1C-202ENST00000318024 KBTBD11O94819 623 aa13.34□□□□□ -0.27
USH1C-202ENST00000318024 IGKV1D-33P01593 117 aa13.34□□□□□ -0.27
USH1C-202ENST00000318024 IGKV1-33P01594 117 aa13.34□□□□□ -0.27
USH1C-202ENST00000318024 RPL23P62829 140 aaKnown RBP13.34□□□□□ -0.27
USH1C-202ENST00000318024 FAM27E3Q08E93 113 aa13.34□□□□□ -0.27
USH1C-202ENST00000318024 IGFBP7Q16270 282 aa13.34□□□□□ -0.27
USH1C-202ENST00000318024 TMEM41BQ5BJD5 291 aa13.34□□□□□ -0.27
USH1C-202ENST00000318024 C20orf204Q6ZNR8 217 aa13.34□□□□□ -0.27
USH1C-202ENST00000318024 MRPL30Q8TCC3 161 aaKnown RBP13.34□□□□□ -0.27
USH1C-202ENST00000318024 SCGB1C1Q8TD33 95 aa13.34□□□□□ -0.27
USH1C-202ENST00000318024 TMEM170AQ8WVE7 144 aa13.34□□□□□ -0.27
USH1C-202ENST00000318024 LSM10Q969L4 123 aaKnown RBP13.34□□□□□ -0.27
USH1C-202ENST00000318024 SFXN3Q9BWM7 321 aa13.34□□□□□ -0.27
USH1C-202ENST00000318024 OR2J1Q9GZK6 312 aa13.34□□□□□ -0.27
USH1C-202ENST00000318024 WDR61Q9GZS3 305 aaKnown RBP13.34□□□□□ -0.27
USH1C-202ENST00000318024 MAP1LC3B2A6NCE7 125 aa13.33□□□□□ -0.27
USH1C-202ENST00000318024 IGKV3-15P01624 115 aa13.33□□□□□ -0.27
USH1C-202ENST00000318024 IGLV2-14P01704 120 aa13.33□□□□□ -0.27
USH1C-202ENST00000318024 PSG2P11465 335 aa13.33□□□□□ -0.27
USH1C-202ENST00000318024 NUTF2P61970 127 aaKnown RBP13.33□□□□□ -0.27
USH1C-202ENST00000318024 NCR3LG1Q68D85 454 aa13.33□□□□□ -0.27
USH1C-202ENST00000318024 TGIF2LXQ8IUE1 241 aa13.33□□□□□ -0.27
USH1C-202ENST00000318024 C1orf162Q8NEQ5 155 aaPredicted RBP13.33□□□□□ -0.27
USH1C-202ENST00000318024 ACY3Q96HD9 319 aa13.33□□□□□ -0.27
USH1C-202ENST00000318024 MAP1LC3BQ9GZQ8 125 aa13.33□□□□□ -0.27
USH1C-202ENST00000318024 MTCH1Q9NZJ7 389 aa13.33□□□□□ -0.27
USH1C-202ENST00000318024 ZNF835Q9Y2P0 537 aa13.33□□□□□ -0.27
USH1C-202ENST00000318024 PCNX1Q96RV3 2341 aa13.33□□□□□ -0.27
USH1C-202ENST00000318024 SYNGR2O43760 224 aa13.33□□□□□ -0.28
USH1C-202ENST00000318024 METTL15P1P0C7V9 234 aa13.33□□□□□ -0.28
USH1C-202ENST00000318024 KLRB1Q12918 225 aa13.33□□□□□ -0.28
USH1C-202ENST00000318024 SLC25A24Q6NUK1 477 aa13.33□□□□□ -0.28
USH1C-202ENST00000318024 SMIM7Q9BQ49 75 aa13.33□□□□□ -0.28
USH1C-202ENST00000318024 MRPL37Q9BZE1 423 aaKnown RBP13.33□□□□□ -0.28
USH1C-202ENST00000318024 OR2W1Q9Y3N9 320 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms