RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 HIST3H3Q16695 136 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 HLA-DRB5Q30154 266 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 NUDT3O95989 172 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 CD59P13987 128 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 RPL8P62917 257 aaKnown RBP6.65□□□□□ -1.34
SCN9A-201ENST00000303354 ADIPOQQ15848 244 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 FAM27BQ5VT28 67 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 STHQ8IWL8 128 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 ZNF680Q8NEM1 530 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.65□□□□□ -1.34
SCN9A-201ENST00000303354 A0A1W2PS18 150 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 ODAMA1E959 279 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 IGSF23A1L1A6 192 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 OR4C45A6NMZ5 311 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 MEOX2P50222 304 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 DLK1P80370 383 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 RELQ04864 619 aaPredicted RBP6.65□□□□□ -1.34
SCN9A-201ENST00000303354 MEIG1Q5JSS6 88 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 OR10G8Q8NGN5 311 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 GPR146Q96CH1 333 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 LHFPL6Q9Y693 200 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 RBFOX3A6NFN3 312 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 DLX6P56179 175 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 RIGQ13278 110 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 GABRA6Q16445 453 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 LHFPL5Q8TAF8 219 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 S100A8P05109 93 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 UMODP07911 640 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 RELBQ01201 579 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 EIF4E3Q8N5X7 224 aaKnown RBP6.65□□□□□ -1.35
SCN9A-201ENST00000303354 MOB4Q9Y3A3 225 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 PGLYRP1O75594 196 aaPredicted RBP6.65□□□□□ -1.35
SCN9A-201ENST00000303354 GATA2P23769 480 aaPredicted RBP6.65□□□□□ -1.35
SCN9A-201ENST00000303354 Q0VFX4 171 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 SYT8Q8NBV8 401 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 OR51G1Q8NGK1 321 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 C8orf46Q8TAG6 207 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 OR5AC2Q9NZP5 309 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 A0A1B0GV72 72 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 MPDU1O75352 247 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 APCSP02743 223 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 UBE2V2Q15819 145 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 MBNL2Q5VZF2 373 aaKnown RBP6.65□□□□□ -1.35
SCN9A-201ENST00000303354 PRSS54Q6PEW0 395 aa6.65□□□□□ -1.35
SCN9A-201ENST00000303354 PTBP1P26599 531 aaKnown RBP eCLIP6.64□□□□□ -1.357e-8■■■□□ 17.7
SCN9A-201ENST00000303354 SRSF12Q8WXF0 261 aaKnown RBP6.64□□□□□ -1.35
SCN9A-201ENST00000303354 WDYHV1Q96HA8 205 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 Q9N2K0 584 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 ZNF107Q9UII5 783 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-201ENST00000303354 KCNK7Q9Y2U2 307 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 POLR2AP24928 1970 aaKnown RBP6.64□□□□□ -1.35
SCN9A-201ENST00000303354 IL4P05112 153 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 ANOS1P23352 680 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 ATG101Q9BSB4 218 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 ZNF703Q9H7S9 590 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-201ENST00000303354 ELOVL5Q9NYP7 299 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 COL18A1P39060 1754 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 TRGV2A0A075B6R0 118 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 M0R381 172 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 HOXD4P09016 255 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-201ENST00000303354 COMPP49747 757 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-201ENST00000303354 CACNG7P62955 275 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 SLC35E3Q7Z769 313 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 PPP1R27Q86WC6 154 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 FGFRL1Q8N441 504 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 BEX4Q9NWD9 120 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-201ENST00000303354 IGHV3-73A0A0B4J1V6 119 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 SNRPEP62304 92 aaKnown RBP6.64□□□□□ -1.35
SCN9A-201ENST00000303354 NEUROG1Q92886 237 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 MAP1LC3CQ9BXW4 147 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 FBXL7Q9UJT9 491 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 TBL2Q9Y4P3 447 aaKnown RBP6.64□□□□□ -1.35
SCN9A-201ENST00000303354 SCN1AP35498 2009 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 A0A1W2PPC1 479 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 GFI1BQ5VTD9 330 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 FAM110DQ8TAY7 271 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-201ENST00000303354 LPAR3Q9UBY5 353 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 NUP205Q92621 2012 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 SAP30O75446 220 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 TMEM177Q53S58 311 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 C2orf83Q53S99 150 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 LEMD1Q68G75 181 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 PQLC2Q6ZP29 291 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 MCM3APO60318 1980 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 NDUFB4O95168 129 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 FAM3BP58499 235 aaPredicted RBP6.64□□□□□ -1.35
SCN9A-201ENST00000303354 OR10C1Q96KK4 312 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 GGCTO75223 188 aaKnown RBP6.64□□□□□ -1.35
SCN9A-201ENST00000303354 IGHV3-53P01767 116 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 TMEM91Q6ZNR0 172 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 OR2T10Q8NGZ9 312 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 SLC25A33Q9BSK2 321 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 ELOVL1Q9BW60 279 aa6.64□□□□□ -1.35
SCN9A-201ENST00000303354 GPR82Q96P67 336 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 GSX1Q9H4S2 264 aaPredicted RBP6.63□□□□□ -1.35
SCN9A-201ENST00000303354 MMP26Q9NRE1 261 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 HSPB7Q9UBY9 170 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 PTP4A3O75365 173 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 DXOO77932 396 aaKnown RBP6.63□□□□□ -1.35
SCN9A-201ENST00000303354 CD74P04233 296 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 255 ms