RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PHF3Q92576 2039 aaKnown RBP13.17□□□□□ -0.3
SHH-201ENST00000297261 DOPEY2Q9Y3R5 2298 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 TRGV5A0A0B4J1U4 118 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 APCSP02743 223 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 TCTAP57738 103 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 PSG4Q00888 419 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 COX19Q49B96 90 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 ASPHD2Q6ICH7 369 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 S100A7AQ86SG5 101 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 FGFRL1Q8N441 504 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 DNAJC4Q9NNZ3 241 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 MKI67P46013 3256 aaKnown RBP13.17□□□□□ -0.3
SHH-201ENST00000297261 A0A087WWC5 75 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 C19orf67A6NJJ6 358 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 E9PQ18 207 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 IGFBP7Q16270 282 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 PPP1R32Q7Z5V6 425 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 OR10X1Q8NGY0 326 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 TMEM167BQ9NRX6 74 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 FOXD3Q9UJU5 478 aaPredicted RBP13.17□□□□□ -0.3
SHH-201ENST00000297261 TEX50A0A1B0GTY4 177 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 CXorf1O96002 111 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 ZNF883P0CG24 379 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 OPRK1P41145 380 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 LEMD1Q68G75 181 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 WDFY1Q8IWB7 410 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 ALPK3Q96L96 1907 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 DOCK11Q5JSL3 2073 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 C9JQL5 133 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 UMODP07911 640 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 HIST3H2BBQ8N257 126 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 TPRX1Q8N7U7 411 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 FGF11Q92914 225 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 SLC22A20A6NK97 555 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 CLDND2Q8NHS1 167 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 ABHD14BQ96IU4 210 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 ATP23Q9Y6H3 246 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 DOCK7Q96N67 2140 aa13.16□□□□□ -0.3
SHH-201ENST00000297261 ZNF137PP52743 207 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 ZFP36L1Q07352 338 aaKnown RBP13.15□□□□□ -0.3
SHH-201ENST00000297261 GABRA6Q16445 453 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 C3AR1Q16581 482 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 ZNF441Q8N8Z8 693 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 SEMA5BQ9P283 1151 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 NEURL1O76050 574 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 ICAM4Q14773 271 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 JOSD1Q15040 202 aaPredicted RBP13.15□□□□□ -0.3
SHH-201ENST00000297261 OR1L4Q8NGR5 311 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 IMMP2LQ96T52 175 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 OPN3Q9H1Y3 402 aaPredicted RBP13.15□□□□□ -0.3
SHH-201ENST00000297261 SDF2L1Q9HCN8 221 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 CHCHD2Q9Y6H1 151 aaPredicted RBP13.15□□□□□ -0.3
SHH-201ENST00000297261 NBASA2RRP1 2371 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 PLCE1Q9P212 2302 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 NTN3O00634 580 aaPredicted RBP13.15□□□□□ -0.3
SHH-201ENST00000297261 ORM2P19652 201 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 OTX1P32242 354 aaPredicted RBP13.15□□□□□ -0.3
SHH-201ENST00000297261 ERVFRD-1P60508 538 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 SUPT4H1P63272 117 aaKnown RBP13.15□□□□□ -0.3
SHH-201ENST00000297261 ARL16Q0P5N6 197 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 CYP2G1PQ6ZSU1 146 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 OR2M7Q8NG81 312 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 OR2Z1Q8NG97 314 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 RNF2Q99496 336 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 WFDC1Q9HC57 220 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 GPR35Q9HC97 309 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 TINAGQ9UJW2 476 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 RFNGQ9Y644 331 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 COL4A3Q01955 1670 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 TRBV6-7A0A0A0MS04 114 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 TNFSF10P50591 281 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 OR5A2Q8NGI9 324 aa13.15□□□□□ -0.3
SHH-201ENST00000297261 TMEM250H0YL14 139 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 FTH1P19P0C7X4 201 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 CSN1S1P47710 185 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 FXYD3Q14802 87 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 IGKV1D-8A0A087WSZ0 117 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 KLK10O43240 276 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 ZIC3O60481 467 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 FGF12P61328 243 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 AESQ08117 197 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 BCL2L2Q92843 193 aaPredicted RBP13.14□□□□□ -0.31
SHH-201ENST00000297261 OR6C3Q9NZP0 311 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 PXMP4Q9Y6I8 212 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 J3QT63 122 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 K7N7A8 449 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 SYNGR1O43759 233 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 MIC13Q5XKP0 118 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 TUSC5Q8IXB3 177 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 C14orf144Q96I85 54 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 IMMP1LQ96LU5 166 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 SF3B5Q9BWJ5 86 aaKnown RBP13.14□□□□□ -0.31
SHH-201ENST00000297261 RNF122Q9H9V4 155 aa13.14□□□□□ -0.31
SHH-201ENST00000297261 SRIP30626 198 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 P2RY6Q15077 328 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 ZNF355PQ9NSJ1 428 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 C3orf80F5H4A9 247 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 PPOXP50336 477 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 HES1Q14469 280 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 ARSJQ5FYB0 599 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms