RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 C22orf34Q6ZV56 151 aa15.27■□□□□ 0.04
SHKBP1-201ENST00000291842 DTD1Q8TEA8 209 aa15.27■□□□□ 0.04
SHKBP1-201ENST00000291842 PSMG3Q9BT73 122 aaPredicted RBP15.27■□□□□ 0.04
SHKBP1-201ENST00000291842 GVINP1Q7Z2Y8 2422 aa15.27■□□□□ 0.04
SHKBP1-201ENST00000291842 SPTBN2O15020 2390 aa15.27■□□□□ 0.03
SHKBP1-201ENST00000291842 CLDN14O95500 239 aa15.27■□□□□ 0.03
SHKBP1-201ENST00000291842 CRYAAP02489 173 aa15.27■□□□□ 0.03
SHKBP1-201ENST00000291842 RAB11AP62491 216 aa15.27■□□□□ 0.03
SHKBP1-201ENST00000291842 KHDC3LQ587J8 217 aa15.27■□□□□ 0.03
SHKBP1-201ENST00000291842 SSX9Q7RTT3 188 aa15.27■□□□□ 0.03
SHKBP1-201ENST00000291842 IQCF2Q8IXL9 164 aa15.27■□□□□ 0.03
SHKBP1-201ENST00000291842 UNKLQ9H9P5 680 aaKnown RBP15.27■□□□□ 0.03
SHKBP1-201ENST00000291842 TRAV1-1A0A0B4J248 108 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 A0A1B0GWJ7 208 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 MARCH11A6NNE9 402 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 IGKV1D-33P01593 117 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 IGKV1-33P01594 117 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 GPR12P47775 334 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 TIMM23BQ5SRD1 257 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 ITLN1Q8WWA0 313 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 LEAP2Q969E1 77 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 WASF3Q9UPY6 502 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 CEBPZOSA8MTT3 80 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 KLK10O43240 276 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 FCGR3BO75015 233 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 KLF3P57682 345 aaPredicted RBP15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 MZT1Q08AG7 82 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 TCF15Q12870 199 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 RNF212Q495C1 297 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 MUCL1Q96DR8 90 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 NIPSNAP3BQ9BS92 247 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 URGCP-MRPS24S4R325 110 aa15.26■□□□□ 0.03
SHKBP1-201ENST00000291842 DMXL2Q8TDJ6 3036 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 SERF2P84101 59 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 HTD2P86397 168 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 FAM27E3Q08E93 113 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 RPL39P5Q59GN2 51 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 TMEM41BQ5BJD5 291 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 ZNF343Q6P1L6 599 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 IGFL3Q6UXB1 125 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 Q6ZS92 163 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 VKORC1L1Q8N0U8 176 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 MEGF10Q96KG7 1140 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 HSD17B10Q99714 261 aaKnown RBP15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 HIPK2Q9H2X6 1198 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 PLCE1Q9P212 2302 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 RAB29O14966 203 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 ADH4P08319 380 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 OR8U8P0C7N1 319 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 BCL2P10415 239 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 AGAP20933 346 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 ZNF134P52741 427 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 MORN2Q502X0 79 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 C1orf185Q5T7R7 199 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 ZNF66Q6ZN08 573 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 ZNF561Q8N587 486 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 RPP25LQ8N5L8 163 aaKnown RBP15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 RBMXL3Q8N7X1 1067 aaKnown RBP15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 FAM169BQ8N8A8 192 aa15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 QTRT1Q9BXR0 403 aaKnown RBP15.25■□□□□ 0.03
SHKBP1-201ENST00000291842 MAP1LC3B2A6NCE7 125 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 OR9G9P0C7N8 305 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 TFF3Q07654 80 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 EIF2S3LQ2VIR3 472 aaKnown RBP15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 ACSM6Q6P461 480 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 DUX4L9Q6RFH8 374 aaPredicted RBP15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 MBD3L1Q8WWY6 194 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 R3HDM4Q96D70 268 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 MAP1LC3BQ9GZQ8 125 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 ANKRD11Q6UB99 2663 aaPredicted RBP15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 PMS2P5A8MQ11 134 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 S100A6P06703 90 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 BMP5P22003 454 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 DUTP33316 252 aaKnown RBP15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 C1orf174Q8IYL3 243 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 OR10P1Q8NGE3 313 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 TVP23CQ96ET8 276 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 SNX22Q96L94 193 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 C12orf57Q99622 126 aa15.24■□□□□ 0.03
SHKBP1-201ENST00000291842 ZNF98A6NK75 572 aa15.23■□□□□ 0.03
SHKBP1-201ENST00000291842 M0R1X1 148 aa15.23■□□□□ 0.03
SHKBP1-201ENST00000291842 MGST3O14880 152 aa15.23■□□□□ 0.03
SHKBP1-201ENST00000291842 GZMHP20718 246 aa15.23■□□□□ 0.03
SHKBP1-201ENST00000291842 FGF7P21781 194 aa15.23■□□□□ 0.03
SHKBP1-201ENST00000291842 GLRXP35754 106 aa15.23■□□□□ 0.03
SHKBP1-201ENST00000291842 DEFB108BQ8NET1 73 aa15.23■□□□□ 0.03
SHKBP1-201ENST00000291842 TMPRSS5Q9H3S3 457 aa15.23■□□□□ 0.03
SHKBP1-201ENST00000291842 SLC31A2O15432 143 aa15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 DEFA4P12838 97 aa15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 NKX6-1P78426 367 aaPredicted RBP15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 FAM90A2PQ658T7 463 aa15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 EDARADDQ8WWZ3 215 aa15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 MRPL37Q9BZE1 423 aaKnown RBP15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 SLC25A22Q9H936 323 aa15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 SLC39A9Q9NUM3 307 aa15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 CISD1Q9NZ45 108 aaKnown RBP15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 DSCAMO60469 2012 aa15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 PIEZO2Q9H5I5 2752 aa15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 IFNA17P01571 189 aa15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 TRAT1Q6PIZ9 186 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms