RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 RPUSD1Q9UJJ7 312 aaKnown RBP13.53□□□□□ -0.24
USP4-201ENST00000265560 MRPS11P82912 194 aaKnown RBP13.53□□□□□ -0.24
USP4-201ENST00000265560 CATR1Q13166 79 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 SLC51BQ86UW2 128 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 TOLLIPQ9H0E2 274 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 IGFBP2P18065 325 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 ZNF345Q14585 488 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 ZNF841Q6ZN19 808 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 IGFBPL1Q8WX77 278 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.52□□□□□ -0.245e-7■■■■■ 32.3
USP4-201ENST00000265560 PDZD9Q8IXQ8 264 aa13.52□□□□□ -0.24
USP4-201ENST00000265560 CYTL1Q9NRR1 136 aa13.52□□□□□ -0.24
USP4-201ENST00000265560 POMT1Q9Y6A1 747 aa13.52□□□□□ -0.24
USP4-201ENST00000265560 TET2Q6N021 2002 aaPredicted RBP13.52□□□□□ -0.25
USP4-201ENST00000265560 RNF212BA8MTL3 300 aa13.52□□□□□ -0.25
USP4-201ENST00000265560 LYL1P12980 280 aa13.52□□□□□ -0.25
USP4-201ENST00000265560 PAX6P26367 422 aa13.52□□□□□ -0.25
USP4-201ENST00000265560 FBXL17Q9UF56 701 aa13.52□□□□□ -0.25
USP4-201ENST00000265560 F12P00748 615 aaPredicted RBP13.51□□□□□ -0.25
USP4-201ENST00000265560 OR2B8PP59922 312 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 CLINT1Q14677 625 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 ZNF439Q8NDP4 499 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 CORO2AQ92828 525 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 GAL3ST2Q9H3Q3 398 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 RFNGQ9Y644 331 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 NAV2Q8IVL1 2488 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 KIAA1324LA8MWY0 1029 aaPredicted RBP13.51□□□□□ -0.25
USP4-201ENST00000265560 DTX2Q86UW9 622 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 ZNF525Q8N782 197 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 TMED6Q8WW62 240 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 AQP10Q96PS8 301 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 SPIN2AQ99865 258 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 SPIN2BQ9BPZ2 258 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 ZNF251Q9BRH9 671 aa13.51□□□□□ -0.25
USP4-201ENST00000265560 E5RGE8 158 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 FBXO24O75426 580 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 CRYZL1O95825 349 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 SRSF1Q07955 248 aaKnown RBP eCLIP13.5□□□□□ -0.25
USP4-201ENST00000265560 HEPN1Q6WQI6 88 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 ZBTB34Q8NCN2 500 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 HSD17B10Q99714 261 aaKnown RBP13.5□□□□□ -0.25
USP4-201ENST00000265560 KAAG1Q9UBP8 84 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 RPS10-NUDT3A0A1W2PQS6 291 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 ID3Q02535 119 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 MEF2CQ06413 473 aaPredicted RBP13.5□□□□□ -0.25
USP4-201ENST00000265560 ZNF383Q8NA42 475 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 WFDC1Q9HC57 220 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 TRAV3A0A0B4J244 114 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 IGSF23A1L1A6 192 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 MARCH11A6NNE9 402 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 RAB29O14966 203 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 COL8A1P27658 744 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 C11orf42Q8N5U0 333 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 CXorf58Q96LI9 332 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 KMT2BQ9UMN6 2715 aaPredicted RBP13.5□□□□□ -0.25
USP4-201ENST00000265560 CCDC168Q8NDH2 2452 aa13.5□□□□□ -0.25
USP4-201ENST00000265560 IGKV1-16P04430 117 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 COX7A1P24310 79 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 VAMP2P63027 116 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 TMEM267Q0VDI3 215 aaPredicted RBP13.49□□□□□ -0.25
USP4-201ENST00000265560 IL22RA2Q969J5 263 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 S1PR3Q99500 378 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 GSX2Q9BZM3 304 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 C22orf46C9J442 243 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 PITX3O75364 302 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 HNF4GQ14541 408 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 WDR25Q64LD2 544 aaPredicted RBP13.49□□□□□ -0.25
USP4-201ENST00000265560 ZDHHC16Q969W1 377 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 R3HDM4Q96D70 268 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 NCOR1P1Q9H4R4 102 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 ONECUT1Q9UBC0 465 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 CSPG4Q6UVK1 2322 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 NAV3Q8IVL0 2385 aa13.49□□□□□ -0.25
USP4-201ENST00000265560 A0A1W2PRD5 423 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 A0A1W2PRF3 423 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 A0A1W2PRM7 423 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 PAX9P55771 341 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 ARF6P62330 175 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 TMEM155Q4W5P6 130 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 ZNF66Q6ZN08 573 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 SLC25A48Q6ZT89 311 aaKnown RBP13.48□□□□□ -0.25
USP4-201ENST00000265560 H2BFWTQ7Z2G1 175 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 ZNF295-AS1Q8N0V1 137 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 OR2C3Q8N628 320 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 OR10X1Q8NGY0 326 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 RAB1CQ92928 201 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 TIMD4Q96H15 378 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 TAS2R3Q9NYW6 316 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 A0A1B0GU03 582 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 NDUFA2O43678 99 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 WNT2P09544 360 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 OR9G9P0C7N8 305 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 MYOD1P15172 320 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 SIRT7Q9NRC8 400 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 IGHV3-72A0A0B4J1Y9 119 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 PPIAL4CA0A0B4J2A2 164 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 PPIAL4GP0DN37 164 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 RAB14P61106 215 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 MMP24Q9Y5R2 645 aa13.48□□□□□ -0.25
USP4-201ENST00000265560 ABCA2Q9BZC7 2435 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms