RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ZMAT5Q9UDW3 170 aaKnown RBP9.23□□□□□ -0.93
CD44-201ENST00000263398 PILRBQ9UKJ0 227 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 EPOPA6NHQ4 379 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 DIRC3C9JPN6 131 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 LINC00869P0C866 280 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 LYRM7Q5U5X0 104 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 ZNF441Q8N8Z8 693 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 FAM216AQ8WUB2 273 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 SLC25A33Q9BSK2 321 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 RIF1Q5UIP0 2472 aaKnown RBP9.23□□□□□ -0.93
CD44-201ENST00000263398 J3QW42 95 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 ZNHIT1O43257 154 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 HSPE1P61604 102 aaKnown RBP9.23□□□□□ -0.93
CD44-201ENST00000263398 LAMTOR1Q6IAA8 161 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 PET117Q6UWS5 81 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 OR5R1Q8NH85 324 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 LOXL4Q96JB6 756 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 MEGF10Q96KG7 1140 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 PCGF1Q9BSM1 259 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 TMEM74BQ9NUR3 256 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 HIGD1AQ9Y241 93 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 INTS1Q8N201 2190 aaKnown RBP9.23□□□□□ -0.93
CD44-201ENST00000263398 A0A0B4J293 547 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 MARCH11A6NNE9 402 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 RECKO95980 971 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 CD99P14209 185 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 PTGDSP41222 190 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 RPL8P62917 257 aaKnown RBP9.22□□□□□ -0.93
CD44-201ENST00000263398 ZNF658BQ4V348 819 aaPredicted RBP9.22□□□□□ -0.93
CD44-201ENST00000263398 C1orf185Q5T7R7 199 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 ZNF343Q6P1L6 599 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 EIF4E3Q8N5X7 224 aaKnown RBP9.22□□□□□ -0.93
CD44-201ENST00000263398 TMEM54Q969K7 222 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 SMIM8Q96KF7 97 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 ZNF552Q9H707 407 aaPredicted RBP9.22□□□□□ -0.93
CD44-201ENST00000263398 NEUROG3Q9Y4Z2 214 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 DOPEY2Q9Y3R5 2298 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 SNCGO76070 127 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 APELAP0DMC3 54 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 ZNF818PQ6ZRF7 136 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 GALNT14Q96FL9 552 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 SCNM1Q9BWG6 230 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 NCOR1O75376 2440 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 ID4P47928 161 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 ZNF362Q5T0B9 420 aaPredicted RBP9.22□□□□□ -0.93
CD44-201ENST00000263398 MIC13Q5XKP0 118 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 ASPHD2Q6ICH7 369 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 MMD2Q8IY49 270 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 SOSTQ9BQB4 213 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 CALYQ9NYX4 217 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 CISD1Q9NZ45 108 aaKnown RBP9.22□□□□□ -0.93
CD44-201ENST00000263398 TGFBR3LH3BV60 316 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 TIAF1O95411 115 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 KRTCAP3Q53RY4 240 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 KLF14Q8TD94 323 aaPredicted RBP9.22□□□□□ -0.93
CD44-201ENST00000263398 OPN3Q9H1Y3 402 aaPredicted RBP9.22□□□□□ -0.93
CD44-201ENST00000263398 SH3BGRL3Q9H299 93 aa9.22□□□□□ -0.93
CD44-201ENST00000263398 GCGP01275 180 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 HLA-DQA1P01909 254 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 ZNF137PP52743 207 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 IBA57Q5T440 356 aaKnown RBP9.21□□□□□ -0.93
CD44-201ENST00000263398 CDCP2Q5VXM1 449 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 GBGT1Q8N5D6 347 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 TM2D1Q9BX74 207 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 WDR81Q562E7 1941 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 ZG16O60844 167 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 RAMP1O60894 148 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 ZNF25P17030 456 aaPredicted RBP9.21□□□□□ -0.93
CD44-201ENST00000263398 FHITP49789 147 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 ERVFRD-1P60508 538 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 KCNMB1Q16558 191 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 C1QL2Q7Z5L3 287 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 NR2C2APQ86WQ0 139 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 RARRES2Q99969 163 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 PSMG3Q9BT73 122 aaPredicted RBP9.21□□□□□ -0.93
CD44-201ENST00000263398 TMEM208Q9BTX3 173 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 TMEM140Q9NV12 185 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 IL36RNQ9UBH0 155 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 JPT1Q9UK76 154 aa9.21□□□□□ -0.93
CD44-201ENST00000263398 CALHM1Q8IU99 346 aa9.21□□□□□ -0.94
CD44-201ENST00000263398 OR1P1Q8NH06 330 aa9.21□□□□□ -0.94
CD44-201ENST00000263398 HSPB9Q9BQS6 159 aa9.21□□□□□ -0.94
CD44-201ENST00000263398 LINC00470Q9BZP3 86 aa9.21□□□□□ -0.94
CD44-201ENST00000263398 IGHV3-21A0A0B4J1V1 117 aa9.21□□□□□ -0.94
CD44-201ENST00000263398 MSGN1A6NI15 193 aa9.21□□□□□ -0.94
CD44-201ENST00000263398 NKX2-8O15522 239 aa9.21□□□□□ -0.94
CD44-201ENST00000263398 RPLP1P05386 114 aaKnown RBP9.21□□□□□ -0.94
CD44-201ENST00000263398 CEBPDP49716 269 aaPredicted RBP9.21□□□□□ -0.94
CD44-201ENST00000263398 SLC35B1P78383 322 aa9.21□□□□□ -0.94
CD44-201ENST00000263398 IZUMO4Q1ZYL8 232 aa9.21□□□□□ -0.94
CD44-201ENST00000263398 LRRC75BQ2VPJ9 315 aa9.21□□□□□ -0.94
CD44-201ENST00000263398 DGAT2L7PQ6IED9 249 aa9.21□□□□□ -0.94
CD44-201ENST00000263398 HIST1H2BAQ96A08 127 aa9.21□□□□□ -0.94
CD44-201ENST00000263398 TP53RKQ96S44 253 aa9.21□□□□□ -0.94
CD44-201ENST00000263398 IGKV1D-43A0A0B4J1Z2 117 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 LOC101059948A0A1B0GTJ6 334 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 TMEM250H0YL14 139 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 ADAM11O75078 769 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 ZNF735P0CB33 412 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 DRAM1Q8N682 238 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms