RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 PTRH2Q9Y3E5 179 aaKnown RBP12.49□□□□□ -0.41
PTPRA-201ENST00000216877 ZNHIT1O43257 154 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 TSPAN2O60636 221 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 DHRS3O75911 302 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 VENTXO95231 258 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 OCC1Q8TAD7 63 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 TMEM234Q8WY98 164 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 TECRQ9NZ01 308 aaKnown RBP12.49□□□□□ -0.41
PTPRA-201ENST00000216877 LRRK1Q38SD2 2015 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 MUC22E2RYF6 1773 aaPredicted RBP12.49□□□□□ -0.41
PTPRA-201ENST00000216877 A0A0J9YY10 115 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 MMP23AO75900 390 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 CTXN2P0C2S0 81 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 IGLL1P15814 213 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 Q6ZRM9 215 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 CD207Q9UJ71 328 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 A0A1W2PS18 150 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 CA2P00918 260 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 MSR1P21757 451 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 ELSPBP1Q96BH3 223 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 MCRIP2Q9BUT9 160 aaKnown RBP12.48□□□□□ -0.41
PTPRA-201ENST00000216877 MRPS16Q9Y3D3 137 aaKnown RBP12.48□□□□□ -0.41
PTPRA-201ENST00000216877 NOTCH4Q99466 2003 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 ZNF318Q5VUA4 2279 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 IGLC7A0M8Q6 106 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 SLC22A20A6NK97 555 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 PPIAL4DF5H284 164 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 ZNF324O75467 553 aaPredicted RBP12.48□□□□□ -0.41
PTPRA-201ENST00000216877 TUSC2O75896 110 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 HAND1O96004 215 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 NPBWR2P48146 333 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 FOXL2P58012 376 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 CTRLP40313 264 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 MMD2Q8IY49 270 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 RAB37Q96AX2 223 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 LYZL4Q96KX0 146 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 PSMG3Q9BT73 122 aaPredicted RBP12.48□□□□□ -0.41
PTPRA-201ENST00000216877 TM2D1Q9BX74 207 aa12.48□□□□□ -0.41
PTPRA-201ENST00000216877 QTRT1Q9BXR0 403 aaKnown RBP12.48□□□□□ -0.41
PTPRA-201ENST00000216877 M0R135 149 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 CFIP05156 583 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 USF1P22415 310 aaPredicted RBP12.47□□□□□ -0.41
PTPRA-201ENST00000216877 TFF3Q07654 80 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 FOXL1Q12952 345 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 NSDHLQ15738 373 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 NMSQ5H8A3 153 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 VWA1Q6PCB0 445 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 WFDC12Q8WWY7 111 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 ZNF799Q96GE5 643 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 GMPPAQ96IJ6 420 aaPredicted RBP12.47□□□□□ -0.41
PTPRA-201ENST00000216877 CXorf51AA0A1B0GTR3 108 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 SCO2A0A1W2PP80 73 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 SELENOVP59797 346 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 CLEC1BQ9P126 229 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 CDC42EP3Q9UKI2 254 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 CCNOP22674 350 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 FUT7Q11130 342 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 RPEL1Q2QD12 228 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 FNDC7Q5VTL7 733 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 GTF2H5Q6ZYL4 71 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 VASH2Q86V25 355 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 PP6455Q8WZ26 134 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 TMEM56Q96MV1 263 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 COPS7AQ9UBW8 275 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 TMEM56-RWDD3S4R434 201 aa12.47□□□□□ -0.41
PTPRA-201ENST00000216877 IGHV2-26A0A0B4J1V2 119 aa12.46□□□□□ -0.41
PTPRA-201ENST00000216877 PDCD6O75340 191 aa12.46□□□□□ -0.41
PTPRA-201ENST00000216877 ZNF324BQ6AW86 544 aaPredicted RBP12.46□□□□□ -0.41
PTPRA-201ENST00000216877 OR1B1Q8NGR6 318 aa12.46□□□□□ -0.41
PTPRA-201ENST00000216877 OR2T6Q8NHC8 308 aa12.46□□□□□ -0.41
PTPRA-201ENST00000216877 NANOS1Q8WY41 292 aaKnown RBP12.46□□□□□ -0.41
PTPRA-201ENST00000216877 KCNS1Q96KK3 526 aa12.46□□□□□ -0.41
PTPRA-201ENST00000216877 SLC17A4Q9Y2C5 497 aa12.46□□□□□ -0.41
PTPRA-201ENST00000216877 TRAV9-2A0A087WT02 112 aa12.46□□□□□ -0.41
PTPRA-201ENST00000216877 IGHV3-20A0A0C4DH32 117 aa12.46□□□□□ -0.41
PTPRA-201ENST00000216877 hDV102S1A0JD36 115 aa12.46□□□□□ -0.41
PTPRA-201ENST00000216877 C11orf1Q9H5F2 150 aa12.46□□□□□ -0.41
PTPRA-201ENST00000216877 MUC3AQ02505 3323 aa12.46□□□□□ -0.42
PTPRA-201ENST00000216877 A0A087X0K7 114 aa12.46□□□□□ -0.42
PTPRA-201ENST00000216877 PGLYRP1O75594 196 aaPredicted RBP12.46□□□□□ -0.42
PTPRA-201ENST00000216877 CAPZBP47756 277 aa12.46□□□□□ -0.42
PTPRA-201ENST00000216877 PLP1P60201 277 aa12.46□□□□□ -0.42
PTPRA-201ENST00000216877 Q6ZSR6 202 aa12.46□□□□□ -0.42
PTPRA-201ENST00000216877 ZNF721Q8TF20 911 aa12.46□□□□□ -0.42
PTPRA-201ENST00000216877 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.46□□□□□ -0.42
PTPRA-201ENST00000216877 RDH5Q92781 318 aa12.46□□□□□ -0.42
PTPRA-201ENST00000216877 PMCHL2Q9BQD1 86 aa12.46□□□□□ -0.42
PTPRA-201ENST00000216877 DECR2Q9NUI1 292 aa12.46□□□□□ -0.42
PTPRA-201ENST00000216877 KLRF1Q9NZS2 232 aa12.46□□□□□ -0.42
PTPRA-201ENST00000216877 KIAA1549LQ6ZVL6 1849 aa12.45□□□□□ -0.42
PTPRA-201ENST00000216877 TRAV8-6A0A0B4J262 113 aa12.45□□□□□ -0.42
PTPRA-201ENST00000216877 PATE4P0C8F1 98 aa12.45□□□□□ -0.42
PTPRA-201ENST00000216877 PRDX4Q13162 271 aa12.45□□□□□ -0.42
PTPRA-201ENST00000216877 FER1L6-AS1Q8NA97 138 aa12.45□□□□□ -0.42
PTPRA-201ENST00000216877 MTCH1Q9NZJ7 389 aa12.45□□□□□ -0.42
PTPRA-201ENST00000216877 TAX1BP3O14907 124 aa12.45□□□□□ -0.42
PTPRA-201ENST00000216877 TLX3O43711 291 aaPredicted RBP12.45□□□□□ -0.42
PTPRA-201ENST00000216877 GRB2P62993 217 aaKnown RBP12.45□□□□□ -0.42
PTPRA-201ENST00000216877 PMCHL1Q16048 86 aa12.45□□□□□ -0.42
PTPRA-201ENST00000216877 DDIT4LQ96D03 193 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms