RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ZNF98A6NK75 572 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 MARCH11A6NNE9 402 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 C4orf51C9J302 202 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 LMX1BO60663 402 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 RNF224P0DH78 156 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 PF4V1P10720 104 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 TNFRSF9Q07011 255 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 PUSL1Q8N0Z8 303 aaKnown RBP11.65□□□□□ -0.54
SF3A1-201ENST00000215793 LSM10Q969L4 123 aaKnown RBP11.65□□□□□ -0.54
SF3A1-201ENST00000215793 C19orf24Q9BVV8 132 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 IGHMP01871 453 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 ATP5IP56385 69 aaPredicted RBP11.65□□□□□ -0.54
SF3A1-201ENST00000215793 DNM1P46Q6ZS02 220 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 OR1N2Q8NGR9 330 aa11.65□□□□□ -0.54
SF3A1-201ENST00000215793 NPIPB6E9PJ23 425 aa11.65□□□□□ -0.55
SF3A1-201ENST00000215793 OR2A4O95047 310 aa11.65□□□□□ -0.55
SF3A1-201ENST00000215793 C8orf88P0DMB2 117 aa11.65□□□□□ -0.55
SF3A1-201ENST00000215793 MFAP4P55083 255 aa11.65□□□□□ -0.55
SF3A1-201ENST00000215793 PCOLCEQ15113 449 aa11.65□□□□□ -0.55
SF3A1-201ENST00000215793 TM4SF20Q53R12 229 aa11.65□□□□□ -0.55
SF3A1-201ENST00000215793 C10orf128Q5T292 105 aa11.65□□□□□ -0.55
SF3A1-201ENST00000215793 MIC13Q5XKP0 118 aa11.65□□□□□ -0.55
SF3A1-201ENST00000215793 OR2A7Q96R45 310 aa11.65□□□□□ -0.55
SF3A1-201ENST00000215793 DNAJC4Q9NNZ3 241 aa11.65□□□□□ -0.55
SF3A1-201ENST00000215793 CCDC88CQ9P219 2028 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 LTBP4Q8N2S1 1624 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 TMEM14DPA8MWL7 114 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 CDK2AP1O14519 115 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 OR9G1Q8NH87 305 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 CACNA1IQ9P0X4 2223 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 CKAP5Q14008 2032 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 CEP250Q9BV73 2442 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 TRIP12Q14669 1992 aaPredicted RBP11.64□□□□□ -0.55
SF3A1-201ENST00000215793 WNT9BO14905 357 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 SLC25A53Q5H9E4 307 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 SPSB2Q99619 263 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 WNT5BQ9H1J7 359 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 C5orf66Q9H5L9 145 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 SLC25A17O43808 307 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 TMPRSS3P57727 454 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 UNQ5815/PRO19632Q6UWF5 114 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 SYT8Q8NBV8 401 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 SMIM12Q96EX1 92 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 COLQQ9Y215 455 aaPredicted RBP11.64□□□□□ -0.55
SF3A1-201ENST00000215793 A0A1W2PQM1 296 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 CXorf65A6NEN9 183 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 ZNF729A6NN14 1252 aaPredicted RBP11.64□□□□□ -0.55
SF3A1-201ENST00000215793 CD74P04233 296 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 IGKV3-11P04433 115 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 CKS2P33552 79 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 COTL1Q14019 142 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 OR4C13Q8NGP0 309 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 TMEM186Q96B77 213 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 RNF115Q9Y4L5 304 aa11.64□□□□□ -0.55
SF3A1-201ENST00000215793 TMEM238LA0A1B0GVL6 79 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 A6NJY4 79 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 NAT2P11245 290 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 SSTR5P35346 364 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 RPS20P60866 119 aaKnown RBP11.63□□□□□ -0.55
SF3A1-201ENST00000215793 QTRT1Q9BXR0 403 aaKnown RBP11.63□□□□□ -0.55
SF3A1-201ENST00000215793 CSRP3P50461 194 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 RAB9AP51151 201 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 PMCHL1Q16048 86 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 COL5A1-AS1Q5SY13 56 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 HSPB9Q9BQS6 159 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 TMEM229AB2RXF0 380 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 KBTBD11O94819 623 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 ZNF25P17030 456 aaPredicted RBP11.63□□□□□ -0.55
SF3A1-201ENST00000215793 ZNF502Q8TBZ5 544 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 GP6Q9HCN6 339 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 LOC389332A0A1B0GUA5 103 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 TRGC2P03986 189 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 NMUP48645 174 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 CDCP2Q5VXM1 449 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 ZNF738Q8NE65 137 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 OR51G1Q8NGK1 321 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 SMIM8Q96KF7 97 aa11.63□□□□□ -0.55
SF3A1-201ENST00000215793 SYNGR3O43761 229 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 PLAUP00749 431 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 SNRPCP09234 159 aaKnown RBP11.62□□□□□ -0.55
SF3A1-201ENST00000215793 TCF19Q9Y242 345 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 ZNF831Q5JPB2 1677 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 PPIAL4CA0A0B4J2A2 164 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 GCGP01275 180 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 PPIAL4GP0DN37 164 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 ABLIM2Q6H8Q1 611 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 PCSK4Q6UW60 755 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 SPSB4Q96A44 273 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 AUP1Q9Y679 476 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 ZDBF2Q9HCK1 2354 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 A0A1W2PR77 199 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 OR4C46A6NHA9 309 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 MDKP21741 143 aaPredicted RBP11.62□□□□□ -0.55
SF3A1-201ENST00000215793 CEBPDP49716 269 aaPredicted RBP11.62□□□□□ -0.55
SF3A1-201ENST00000215793 SRXN1Q9BYN0 137 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 LINC00470Q9BZP3 86 aa11.62□□□□□ -0.55
SF3A1-201ENST00000215793 QSER1Q2KHR3 1735 aa11.61□□□□□ -0.55
SF3A1-201ENST00000215793 hCG_38984A0A1B0GV85 526 aa11.61□□□□□ -0.55
SF3A1-201ENST00000215793 K7ERU9 68 aa11.61□□□□□ -0.55
SF3A1-201ENST00000215793 COX6B1P14854 86 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms