RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 ZNF580Q9UK33 172 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 A0A0A6YYD4 124 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 IGF1P05019 195 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 PSMD7P51665 324 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 FAM71F2Q6NXP2 309 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 ZNF833PQ6ZTB9 187 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 C5orf24Q7Z6I8 188 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 IL1F10Q8WWZ1 152 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 ARPC1AQ92747 370 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 GFI1Q99684 422 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 MGLLQ99685 303 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 NABP2Q9BQ15 211 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 HSPB9Q9BQS6 159 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 CHCHD6Q9BRQ6 235 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 OR51J1Q9H342 316 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 ACOT13Q9NPJ3 140 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 PIPOXQ9P0Z9 390 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 HSF4Q9ULV5 492 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 MGAT4AQ9UM21 535 aa12.54□□□□□ -0.4
CLN3-264ENST00000637985 HSPA12AO43301 675 aa12.53□□□□□ -0.4
CLN3-264ENST00000637985 OR8U9P0C7N5 309 aa12.53□□□□□ -0.4
CLN3-264ENST00000637985 OR5H8P0DN80 308 aa12.53□□□□□ -0.4
CLN3-264ENST00000637985 CALRP27797 417 aaKnown RBP12.53□□□□□ -0.4
CLN3-264ENST00000637985 SLURP1P55000 103 aa12.53□□□□□ -0.4
CLN3-264ENST00000637985 P2RY14Q15391 338 aa12.53□□□□□ -0.4
CLN3-264ENST00000637985 MMDQ15546 238 aa12.53□□□□□ -0.4
CLN3-264ENST00000637985 RAB11BQ15907 218 aa12.53□□□□□ -0.4
CLN3-264ENST00000637985 MRPL20Q9BYC9 149 aaKnown RBP12.53□□□□□ -0.4
CLN3-264ENST00000637985 BLOC1S6Q9UL45 172 aa12.53□□□□□ -0.4
CLN3-264ENST00000637985 AK6Q9Y3D8 172 aaKnown RBP12.53□□□□□ -0.4
CLN3-264ENST00000637985 SAA2-SAA4A0A096LPE2 208 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 ITGB1BP1O14713 200 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 RAB29O14966 203 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 SOCS1O15524 211 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 SAA2P0DJI9 122 aaPredicted RBP12.52□□□□□ -0.41
CLN3-264ENST00000637985 ACTBP60709 375 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 FABP5Q01469 135 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 TBCEQ15813 527 aaPredicted RBP12.52□□□□□ -0.41
CLN3-264ENST00000637985 IZUMO2Q6UXV1 221 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 SETD6Q8TBK2 473 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 ZNF251Q9BRH9 671 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 IFI27L2Q9H2X8 130 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 RETNQ9HD89 108 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 SLC23A1Q9UHI7 598 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 ZNF107Q9UII5 783 aaPredicted RBP12.52□□□□□ -0.41
CLN3-264ENST00000637985 AK3Q9UIJ7 227 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 V9GY05 133 aa12.52□□□□□ -0.41
CLN3-264ENST00000637985 FOXI3A8MTJ6 420 aaPredicted RBP12.51□□□□□ -0.41
CLN3-264ENST00000637985 PPIFP30405 207 aaKnown RBP12.51□□□□□ -0.41
CLN3-264ENST00000637985 MAP2K4P45985 399 aa12.51□□□□□ -0.41
CLN3-264ENST00000637985 OR3A3P47888 321 aa12.51□□□□□ -0.41
CLN3-264ENST00000637985 TMEM65Q6PI78 240 aa12.51□□□□□ -0.41
CLN3-264ENST00000637985 RPP25LQ8N5L8 163 aaKnown RBP12.51□□□□□ -0.41
CLN3-264ENST00000637985 FAM3DQ96BQ1 224 aa12.51□□□□□ -0.41
CLN3-264ENST00000637985 CNBD2Q96M20 576 aa12.51□□□□□ -0.41
CLN3-264ENST00000637985 OR4C12Q96R67 309 aa12.51□□□□□ -0.41
CLN3-264ENST00000637985 HIPK2Q9H2X6 1198 aa12.51□□□□□ -0.41
CLN3-264ENST00000637985 ABCA13Q86UQ4 5058 aa12.51□□□□□ -0.41
CLN3-264ENST00000637985 NBR2O15453 112 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 IGLV1-40P01703 118 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 HLA-DRB1P01911 266 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 SLC2A2P11168 524 aaPredicted RBP12.5□□□□□ -0.41
CLN3-264ENST00000637985 ZBTB25P24278 435 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 TMEM50BP56557 158 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 HLA-DRB3P79483 266 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 C2orf76Q3KRA6 126 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 ZNF367Q7RTV3 350 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 HAPLN4Q86UW8 402 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 NPBQ8NG41 125 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 OR56B1Q8NGI3 324 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 EDARADDQ8WWZ3 215 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 FAM110AQ9BQ89 295 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 ALX4Q9H161 411 aaPredicted RBP12.5□□□□□ -0.41
CLN3-264ENST00000637985 C12orf4Q9NQ89 552 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 TPSG1Q9NRR2 321 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 RAB26Q9ULW5 256 aa12.5□□□□□ -0.41
CLN3-264ENST00000637985 LINC01619G3V211 115 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 PDCD5O14737 125 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 ST8SIA5O15466 376 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 NDUFA3O95167 84 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 IGLV1-51P01701 117 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 MC5RP33032 325 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 RAB9AP51151 201 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 C5orf64Q2M2E5 130 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 LIN54Q6MZP7 749 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 ARHGAP5-AS1Q96IT6 56 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 RITA1Q96K30 269 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 CMSS1Q9BQ75 279 aaKnown RBP12.49□□□□□ -0.41
CLN3-264ENST00000637985 AGMATQ9BSE5 352 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 HDHD3Q9BSH5 251 aaPredicted RBP12.49□□□□□ -0.41
CLN3-264ENST00000637985 PECRQ9BY49 303 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 Q9N2K0 584 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 RAB22AQ9UL26 194 aa12.49□□□□□ -0.41
CLN3-264ENST00000637985 TRAV1-2A0A0B4J238 106 aa12.48□□□□□ -0.41
CLN3-264ENST00000637985 ERICH4A6NGS2 130 aa12.48□□□□□ -0.41
CLN3-264ENST00000637985 OR5H14A6NHG9 310 aa12.48□□□□□ -0.41
CLN3-264ENST00000637985 DENRO43583 198 aaKnown RBP12.48□□□□□ -0.41
CLN3-264ENST00000637985 CT45A6P0DMU7 189 aa12.48□□□□□ -0.41
CLN3-264ENST00000637985 CT45A5P0DMU8 189 aa12.48□□□□□ -0.41
CLN3-264ENST00000637985 CT45A7P0DMV0 189 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms