RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 TNFRSF1AP19438 455 aa15.29■□□□□ 0.04
CLN3-263ENST00000637871 DMRTC2Q8IXT2 367 aaPredicted RBP15.29■□□□□ 0.04
CLN3-263ENST00000637871 OR13A1Q8NGR1 328 aa15.29■□□□□ 0.04
CLN3-263ENST00000637871 SDSLQ96GA7 329 aa15.29■□□□□ 0.04
CLN3-263ENST00000637871 OR2D2Q9H210 308 aa15.29■□□□□ 0.04
CLN3-263ENST00000637871 WFDC1Q9HC57 220 aa15.29■□□□□ 0.04
CLN3-263ENST00000637871 IGSF23A1L1A6 192 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 F2RL2O00254 374 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 SYNGR2O43760 224 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 SCAF4O95104 1147 aaKnown RBP15.28■□□□□ 0.04
CLN3-263ENST00000637871 IGKV1-39P01597 117 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 IGKV1D-39P04432 117 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 IRF2P14316 349 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 MUC1P15941 1255 aaPredicted RBP15.28■□□□□ 0.04
CLN3-263ENST00000637871 EGR1P18146 543 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 LPAR6P43657 344 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 VHLLQ6RSH7 139 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 OR52L2PQ8NGH6 319 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 C14orf79Q96F83 325 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 TSNAXQ99598 290 aaKnown RBP15.28■□□□□ 0.04
CLN3-263ENST00000637871 HRNRQ86YZ3 2850 aaPredicted RBP15.28■□□□□ 0.04
CLN3-263ENST00000637871 KIAA1324LA8MWY0 1029 aaPredicted RBP15.28■□□□□ 0.04
CLN3-263ENST00000637871 IGHV1-46P01743 117 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 MIDNQ504T8 468 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 FGFRL1Q8N441 504 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 LFNGQ8NES3 379 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 GPHA2Q96T91 129 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 HEATR1Q9H583 2144 aaKnown RBP15.28■□□□□ 0.04
CLN3-263ENST00000637871 CACNG5Q9UF02 275 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 METRNQ9UJH8 293 aa15.28■□□□□ 0.04
CLN3-263ENST00000637871 HECTD1Q9ULT8 2610 aa15.27■□□□□ 0.04
CLN3-263ENST00000637871 ZNF16P17020 682 aaPredicted RBP15.27■□□□□ 0.03
CLN3-263ENST00000637871 SULT1A1P50225 295 aa15.27■□□□□ 0.03
CLN3-263ENST00000637871 RAB7AP51149 207 aa15.27■□□□□ 0.03
CLN3-263ENST00000637871 C10orf91Q5T1B1 145 aa15.27■□□□□ 0.03
CLN3-263ENST00000637871 SP5Q6BEB4 398 aaPredicted RBP15.27■□□□□ 0.03
CLN3-263ENST00000637871 HRH4Q9H3N8 390 aa15.27■□□□□ 0.03
CLN3-263ENST00000637871 NDRG3Q9UGV2 375 aa15.27■□□□□ 0.03
CLN3-263ENST00000637871 PKDREJQ9NTG1 2253 aa15.27■□□□□ 0.03
CLN3-263ENST00000637871 LRRC30A6NM36 301 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 RAB29O14966 203 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 SIAH2O43255 324 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 TXNL1O43396 289 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 IGKV1-5P01602 117 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 APOC3P02656 99 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 PAX9P55771 341 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 DPPA3Q6W0C5 159 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 Q6ZRG5 221 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 SVBPQ8N300 66 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 NARS2Q96I59 477 aaKnown RBP15.26■□□□□ 0.03
CLN3-263ENST00000637871 ATP5SQ99766 215 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 SEC11CQ9BY50 192 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 MAGT1Q9H0U3 335 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 ZNF665Q9H7R5 613 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 GCM1Q9NP62 436 aa15.26■□□□□ 0.03
CLN3-263ENST00000637871 CARHSP1Q9Y2V2 147 aaKnown RBP15.26■□□□□ 0.03
CLN3-263ENST00000637871 A0A0G2JRQ6 117 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 FAM90A9PA6NNJ1 464 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 IFNA5P01569 189 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 EPHA1P21709 976 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 PPP1CCP36873 323 aaKnown RBP15.25■□□□□ 0.03
CLN3-263ENST00000637871 KIR2DS2P43631 304 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 CAMLGP49069 296 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 DVL1P1P54792 670 aaPredicted RBP15.25■□□□□ 0.03
CLN3-263ENST00000637871 HBG1P69891 147 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 HBG2P69892 147 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 FAM209AQ5JX71 171 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 TEX36Q5VZQ5 186 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 OR5C1Q8NGR4 320 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 BSCL2Q96G97 398 aaPredicted RBP15.25■□□□□ 0.03
CLN3-263ENST00000637871 EGLN1Q9GZT9 426 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 PARP12Q9H0J9 701 aaKnown RBP15.25■□□□□ 0.03
CLN3-263ENST00000637871 SMDT1Q9H4I9 107 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.25■□□□□ 0.03
CLN3-263ENST00000637871 BTBD17A6NE02 478 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 RBFOX2O43251 390 aaKnown RBP eCLIP15.25■□□□□ 0.03
CLN3-263ENST00000637871 TSPAN15O95858 294 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 EDDM3AQ14507 147 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 MORN2Q502X0 79 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 STUMQ69YW2 141 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 C1orf87Q8N0U7 546 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 BOLLQ8N9W6 283 aaKnown RBP15.25■□□□□ 0.03
CLN3-263ENST00000637871 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.25■□□□□ 0.03
CLN3-263ENST00000637871 UBALD1Q8TB05 177 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 TCTEX1D2Q8WW35 142 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 CIB3Q96Q77 187 aaPredicted RBP15.25■□□□□ 0.03
CLN3-263ENST00000637871 PARD6GQ9BYG4 376 aaPredicted RBP15.25■□□□□ 0.03
CLN3-263ENST00000637871 HIPK2Q9H2X6 1198 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 TREM1Q9NP99 234 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 GNG12Q9UBI6 72 aa15.25■□□□□ 0.03
CLN3-263ENST00000637871 CELSR2Q9HCU4 2923 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 CENPEQ02224 2701 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 BAHCC1Q9P281 2608 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 DPRXA6NFQ7 191 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 OR8U8P0C7N1 319 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 P0C879 139 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 CGB3P0DN86 165 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 CGB7P0DN87 165 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 COX6B1P14854 86 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 SSTR5P35346 364 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms