RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 KIAA1324LA8MWY0 1029 aaPredicted RBP13.02□□□□□ -0.32
CLN3-251ENST00000636853 K7N7A8 449 aa13.02□□□□□ -0.32
CLN3-251ENST00000636853 SLC25A6P12236 298 aa13.02□□□□□ -0.32
CLN3-251ENST00000636853 LINC00205P59089 165 aa13.02□□□□□ -0.32
CLN3-251ENST00000636853 EIF4EBP1Q13541 118 aaPredicted RBP13.02□□□□□ -0.32
CLN3-251ENST00000636853 ADAM5Q6NVV9 412 aa13.02□□□□□ -0.32
CLN3-251ENST00000636853 ZCCHC24Q8N2G6 241 aaKnown RBP13.02□□□□□ -0.32
CLN3-251ENST00000636853 TMEM217Q8N7C4 229 aa13.02□□□□□ -0.32
CLN3-251ENST00000636853 PPP1R35Q8TAP8 253 aa13.02□□□□□ -0.32
CLN3-251ENST00000636853 GINS3Q9BRX5 216 aa13.02□□□□□ -0.32
CLN3-251ENST00000636853 PSG11Q9UQ72 335 aa13.02□□□□□ -0.32
CLN3-251ENST00000636853 ROS1P08922 2347 aa13.02□□□□□ -0.32
CLN3-251ENST00000636853 DYSFO75923 2080 aa13.02□□□□□ -0.33
CLN3-251ENST00000636853 PIGBOS1A0A0B4J2F0 54 aa13.02□□□□□ -0.33
CLN3-251ENST00000636853 COLCA2A8K830 154 aa13.02□□□□□ -0.33
CLN3-251ENST00000636853 H3BP45 60 aa13.02□□□□□ -0.33
CLN3-251ENST00000636853 EIF3GO75821 320 aaKnown RBP eCLIP13.02□□□□□ -0.33
CLN3-251ENST00000636853 OR4A8P0C604 315 aa13.02□□□□□ -0.33
CLN3-251ENST00000636853 ZNF816Q0VGE8 651 aaPredicted RBP13.02□□□□□ -0.33
CLN3-251ENST00000636853 PEA15Q15121 130 aa13.02□□□□□ -0.33
CLN3-251ENST00000636853 ADIPOQQ15848 244 aa13.02□□□□□ -0.33
CLN3-251ENST00000636853 ZBTB34Q8NCN2 500 aa13.02□□□□□ -0.33
CLN3-251ENST00000636853 SLC25A31Q9H0C2 315 aa13.02□□□□□ -0.33
CLN3-251ENST00000636853 TREM1Q9NP99 234 aa13.02□□□□□ -0.33
CLN3-251ENST00000636853 SMCO4Q9NRQ5 59 aa13.02□□□□□ -0.33
CLN3-251ENST00000636853 DCAF16Q9NXF7 216 aa13.02□□□□□ -0.33
CLN3-251ENST00000636853 RAI1Q7Z5J4 1906 aaPredicted RBP13.02□□□□□ -0.33
CLN3-251ENST00000636853 TRGV8A0A0C4DH27 118 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 TNFSF4P23510 183 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 TRAT1Q6PIZ9 186 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 ZNF295-AS1Q8N0V1 137 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 FGFRL1Q8N441 504 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 WFIKKN1Q96NZ8 548 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 UBE2CO00762 179 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 IGHV3-7P01780 117 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 MMP9P14780 707 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 GZMHP20718 246 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 DYNLT3P51808 116 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 CCL8P80075 99 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 HTD2P86397 168 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 Q6ZRG5 221 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 OR5C1Q8NGR4 320 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 TCTEX1D2Q8WW35 142 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 TMEM231Q9H6L2 316 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 SEBOXQ9HB31 216 aaPredicted RBP13.01□□□□□ -0.33
CLN3-251ENST00000636853 RFNGQ9Y644 331 aa13.01□□□□□ -0.33
CLN3-251ENST00000636853 C17orf98A8MV24 154 aa13□□□□□ -0.33
CLN3-251ENST00000636853 S100A9P06702 114 aaKnown RBP13□□□□□ -0.33
CLN3-251ENST00000636853 ADH4P08319 380 aa13□□□□□ -0.33
CLN3-251ENST00000636853 SEC11BP0C7V7 166 aa13□□□□□ -0.33
CLN3-251ENST00000636853 BRWD1-AS2P59051 145 aa13□□□□□ -0.33
CLN3-251ENST00000636853 Q3ZCU0 254 aa13□□□□□ -0.33
CLN3-251ENST00000636853 FAM222BQ8WU58 562 aa13□□□□□ -0.33
CLN3-251ENST00000636853 AGMATQ9BSE5 352 aa13□□□□□ -0.33
CLN3-251ENST00000636853 FAM212BQ9NTI7 297 aaPredicted RBP13□□□□□ -0.33
CLN3-251ENST00000636853 GNG12Q9UBI6 72 aa13□□□□□ -0.33
CLN3-251ENST00000636853 C5orf52A6NGY3 159 aa13□□□□□ -0.33
CLN3-251ENST00000636853 CLDN1O95832 211 aa13□□□□□ -0.33
CLN3-251ENST00000636853 KRASP01116 189 aa13□□□□□ -0.33
CLN3-251ENST00000636853 CD5P06127 495 aa13□□□□□ -0.33
CLN3-251ENST00000636853 IAPPP10997 89 aa13□□□□□ -0.33
CLN3-251ENST00000636853 G6PCP35575 357 aa13□□□□□ -0.33
CLN3-251ENST00000636853 HABP2Q14520 560 aaPredicted RBP13□□□□□ -0.33
CLN3-251ENST00000636853 AGPAT2O15120 278 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 C1QL1O75973 258 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 S1PR2O95136 353 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 GYPAP02724 150 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 FHITP49789 147 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 UCNP55089 124 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 CATR1Q13166 79 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 CR1LQ2VPA4 569 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 MORN2Q502X0 79 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 STUMQ69YW2 141 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 VKORC1Q9BQB6 163 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 TUBA4BQ9H853 241 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 PARP11Q9NR21 331 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 MED19A0JLT2 244 aaPredicted RBP12.99□□□□□ -0.33
CLN3-251ENST00000636853 LINC00473A8K010 186 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 SYNGR2O43760 224 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 FABP1P07148 127 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 TMEM267Q0VDI3 215 aaPredicted RBP12.99□□□□□ -0.33
CLN3-251ENST00000636853 ZNF266Q14584 549 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 BTNL8Q6UX41 500 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 ZNF561Q8N587 486 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 C14orf79Q96F83 325 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 RAB40CQ96S21 281 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 CCL13Q99616 98 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 FAM96BQ9Y3D0 163 aa12.99□□□□□ -0.33
CLN3-251ENST00000636853 SPTBN4Q9H254 2564 aa12.98□□□□□ -0.33
CLN3-251ENST00000636853 C17orf100A8MU93 164 aa12.98□□□□□ -0.33
CLN3-251ENST00000636853 C1orf196B1AJZ1 125 aa12.98□□□□□ -0.33
CLN3-251ENST00000636853 RNASEK-C17orf49H0YIS7 233 aa12.98□□□□□ -0.33
CLN3-251ENST00000636853 DANCRP0C864 163 aa12.98□□□□□ -0.33
CLN3-251ENST00000636853 IRF2P14316 349 aa12.98□□□□□ -0.33
CLN3-251ENST00000636853 RPL23AP62750 156 aaKnown RBP12.98□□□□□ -0.33
CLN3-251ENST00000636853 UTF1Q5T230 341 aa12.98□□□□□ -0.33
CLN3-251ENST00000636853 JPT1Q9UK76 154 aa12.98□□□□□ -0.33
CLN3-251ENST00000636853 MMP24Q9Y5R2 645 aa12.98□□□□□ -0.33
CLN3-251ENST00000636853 DSCAML1Q8TD84 2053 aa12.98□□□□□ -0.33
CLN3-251ENST00000636853 MUC1P15941 1255 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms