RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 OR5H14A6NHG9 310 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 TMEM14DPA8MWL7 114 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 CA2P00918 260 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 HSPB1P04792 205 aaKnown RBP12.42□□□□□ -0.42
CLN3-246ENST00000636228 SCTP09683 121 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 SRMP19623 302 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 MC5RP33032 325 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 PITPNAQ00169 270 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 CD200R1LQ6Q8B3 271 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 TCTEX1D1Q8N7M0 179 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 OR5AN1Q8NGI8 311 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 OR6Q1Q8NGQ2 317 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 FBLIM1Q8WUP2 373 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 THRSPQ92748 146 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 RHOVQ96L33 236 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 LPAR5Q9H1C0 372 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 FKBP14Q9NWM8 211 aa12.42□□□□□ -0.42
CLN3-246ENST00000636228 PTGES3LE9PB15 166 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 SLC22A1O15245 554 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 TRGV3P03979 118 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 IGKV1-16P04430 117 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 OR8U9P0C7N5 309 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 RPS16P62249 146 aaKnown RBP12.41□□□□□ -0.42
CLN3-246ENST00000636228 RCN1Q15293 331 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 HSD17B12Q53GQ0 312 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 AKIRIN2Q53H80 203 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 ZNF562Q6V9R5 426 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 MS4A15Q8N5U1 240 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 ZNF383Q8NA42 475 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 GRPEL2Q8TAA5 225 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 FLYWCH2Q96CP2 140 aaKnown RBP12.41□□□□□ -0.42
CLN3-246ENST00000636228 OR4C12Q96R67 309 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 ZNF355PQ9NSJ1 428 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 RRP15Q9Y3B9 282 aaKnown RBP12.41□□□□□ -0.42
CLN3-246ENST00000636228 SACSQ9NZJ4 4579 aa12.41□□□□□ -0.42
CLN3-246ENST00000636228 ARPC1BO15143 372 aaKnown RBP12.4□□□□□ -0.42
CLN3-246ENST00000636228 HSPA12AO43301 675 aa12.4□□□□□ -0.42
CLN3-246ENST00000636228 CDK1P06493 297 aa12.4□□□□□ -0.42
CLN3-246ENST00000636228 LYL1P12980 280 aa12.4□□□□□ -0.42
CLN3-246ENST00000636228 CPEP16870 476 aa12.4□□□□□ -0.42
CLN3-246ENST00000636228 ZBTB25P24278 435 aa12.4□□□□□ -0.42
CLN3-246ENST00000636228 HLA-DRB3P79483 266 aa12.4□□□□□ -0.42
CLN3-246ENST00000636228 ZFAND6Q6FIF0 208 aa12.4□□□□□ -0.42
CLN3-246ENST00000636228 OR5T1Q8NG75 326 aa12.4□□□□□ -0.42
CLN3-246ENST00000636228 PHYHIPQ92561 330 aa12.4□□□□□ -0.42
CLN3-246ENST00000636228 TMEM203Q969S6 136 aa12.4□□□□□ -0.42
CLN3-246ENST00000636228 GFI1Q99684 422 aa12.4□□□□□ -0.42
CLN3-246ENST00000636228 RSRP1Q9BUV0 290 aa12.4□□□□□ -0.42
CLN3-246ENST00000636228 ZMAT4Q9H898 229 aa12.4□□□□□ -0.42
CLN3-246ENST00000636228 IGKV1-6A0A0C4DH72 117 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 ANKRD34BA5PLL1 514 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 RBBP9O75884 186 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 BPNT1O95861 308 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 CD37P11049 281 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 TMEM50BP56557 158 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 DEFA5Q01523 94 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 PJVKQ0ZLH3 352 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 FXYD3Q14802 87 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 PYHIN1Q6K0P9 492 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 MOB1BQ7L9L4 216 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 Q8N1Y9 231 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 OR6M1Q8NGM8 313 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 MND1Q9BWT6 205 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 Q9N2K0 584 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 C8orf4Q9NR00 106 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 LSM2Q9Y333 95 aaKnown RBP12.39□□□□□ -0.43
CLN3-246ENST00000636228 TENM2Q9NT68 2774 aa12.39□□□□□ -0.43
CLN3-246ENST00000636228 TRBV6-6A0A0A6YYG2 114 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 ITGB1BP1O14713 200 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 SLC25A17O43808 307 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 CD3GP09693 182 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 UCHL1P09936 223 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 IGHV4-30-4P0DP06 118 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 CD40LGP29965 261 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 VEGFCP49767 419 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 CLDN12P56749 244 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 SSBP2P81877 361 aaPredicted RBP12.38□□□□□ -0.43
CLN3-246ENST00000636228 SPHARQ15513 63 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 MED22Q15528 200 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 OGFRL1Q5TC84 451 aaPredicted RBP12.38□□□□□ -0.43
CLN3-246ENST00000636228 LIPKQ5VXJ0 399 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 ARHGAP5-AS1Q96IT6 56 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 TSNAXQ99598 290 aaKnown RBP12.38□□□□□ -0.43
CLN3-246ENST00000636228 RNF5Q99942 180 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 RIMS4Q9H426 269 aaPredicted RBP12.38□□□□□ -0.43
CLN3-246ENST00000636228 PLGRKTQ9HBL7 147 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 PALMDQ9NP74 551 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 ZNF221Q9UK13 617 aa12.38□□□□□ -0.43
CLN3-246ENST00000636228 AK6Q9Y3D8 172 aaKnown RBP12.38□□□□□ -0.43
CLN3-246ENST00000636228 FOXI3A8MTJ6 420 aaPredicted RBP12.37□□□□□ -0.43
CLN3-246ENST00000636228 M0R1X1 148 aa12.37□□□□□ -0.43
CLN3-246ENST00000636228 TFAP2AP05549 437 aa12.37□□□□□ -0.43
CLN3-246ENST00000636228 ARSBP15848 533 aa12.37□□□□□ -0.43
CLN3-246ENST00000636228 PLA2G7Q13093 441 aa12.37□□□□□ -0.43
CLN3-246ENST00000636228 ANKRD13BQ86YJ7 626 aa12.37□□□□□ -0.43
CLN3-246ENST00000636228 FAM89BQ8N5H3 189 aa12.37□□□□□ -0.43
CLN3-246ENST00000636228 EDARADDQ8WWZ3 215 aa12.37□□□□□ -0.43
CLN3-246ENST00000636228 PTX4Q96A99 478 aa12.37□□□□□ -0.43
CLN3-246ENST00000636228 URM1Q9BTM9 101 aaKnown RBP12.37□□□□□ -0.43
CLN3-246ENST00000636228 ELOVL1Q9BW60 279 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms