RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 NEDD4LQ96PU5 975 aa11.9□□□□□ -0.5
PDLIM3-213ENST00000629667 TSNAXQ99598 290 aaKnown RBP11.9□□□□□ -0.5
PDLIM3-213ENST00000629667 SULT4A1Q9BR01 284 aa11.9□□□□□ -0.5
PDLIM3-213ENST00000629667 ALMS1Q8TCU4 4167 aa11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 TRBV5-7A0A0A0MS05 114 aa11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 ATP5HO75947 161 aa11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 SPDEFO95238 335 aa11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 CNIH1O95406 144 aa11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 SNRPBP14678 240 aaKnown RBP11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 RPS16P62249 146 aaKnown RBP11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 ZFP41Q8N8Y5 198 aa11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 SETD6Q8TBK2 473 aa11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 FAAP24Q9BTP7 215 aa11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 KRTAP17-1Q9BYP8 105 aa11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 PLEKHA3Q9HB20 300 aa11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 CHMP1AQ9HD42 196 aaPredicted RBP11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 SIGLEC8Q9NYZ4 499 aa11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 GHRLQ9UBU3 117 aa11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 PEF1Q9UBV8 284 aaKnown RBP11.89□□□□□ -0.51
PDLIM3-213ENST00000629667 IRGMA1A4Y4 181 aa11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 IZUMO1RA6ND01 250 aa11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 CSN3P07498 182 aa11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 AADACP22760 399 aa11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 C6orf201Q7Z4U5 140 aa11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 SVOPQ8N4V2 548 aa11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 NKAIN3Q8N8D7 197 aa11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 DRAXINQ8NBI3 349 aaPredicted RBP11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 PGLYRP3Q96LB9 341 aa11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 SLC29A1Q99808 456 aa11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 UQCC2Q9BRT2 126 aa11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 C9orf16Q9BUW7 83 aa11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 PARP12Q9H0J9 701 aaKnown RBP11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 CLEC2DQ9UHP7 191 aa11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 ADAM30Q9UKF2 790 aa11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 EXOSC1Q9Y3B2 195 aaKnown RBP11.88□□□□□ -0.51
PDLIM3-213ENST00000629667 H3BNX3 289 aa11.87□□□□□ -0.51
PDLIM3-213ENST00000629667 ITGB1BP1O14713 200 aa11.87□□□□□ -0.51
PDLIM3-213ENST00000629667 SLC25A17O43808 307 aa11.87□□□□□ -0.51
PDLIM3-213ENST00000629667 WBP4O75554 376 aaKnown RBP11.87□□□□□ -0.51
PDLIM3-213ENST00000629667 TPPPO94811 219 aa11.87□□□□□ -0.51
PDLIM3-213ENST00000629667 IGKV1-16P04430 117 aa11.87□□□□□ -0.51
PDLIM3-213ENST00000629667 CD81P60033 236 aa11.87□□□□□ -0.51
PDLIM3-213ENST00000629667 MED21Q13503 144 aa11.87□□□□□ -0.51
PDLIM3-213ENST00000629667 RPEL1Q2QD12 228 aa11.87□□□□□ -0.51
PDLIM3-213ENST00000629667 LINC00322Q6ZN03 302 aaPredicted RBP11.87□□□□□ -0.51
PDLIM3-213ENST00000629667 EDARADDQ8WWZ3 215 aa11.87□□□□□ -0.51
PDLIM3-213ENST00000629667 AGMATQ9BSE5 352 aa11.87□□□□□ -0.51
PDLIM3-213ENST00000629667 PEMTQ9UBM1 199 aa11.87□□□□□ -0.51
PDLIM3-213ENST00000629667 PNMA8CA0A1B0GUJ8 204 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 TRBV12-3P01733 135 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 APOA2P02652 100 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 ZBTB25P24278 435 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 CEACAM6P40199 344 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 LGALS7P47929 136 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 DEFA5Q01523 94 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 RNLSQ5VYX0 342 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 ZNF343Q6P1L6 599 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 ZFP1Q6P2D0 407 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 PDPNQ86YL7 162 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 BVESQ8NE79 360 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 OR2K2Q8NGT1 345 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 TMEM68Q96MH6 324 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 DERL3Q96Q80 235 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 NEURL2Q9BR09 285 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 C11orf54Q9H0W9 315 aaPredicted RBP11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 SLC2A8Q9NY64 477 aa11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 DIMT1Q9UNQ2 313 aaKnown RBP11.86□□□□□ -0.51
PDLIM3-213ENST00000629667 DYNC1I1O14576 645 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 OR2A4O95047 310 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 NAPSAO96009 420 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 UBBP0CG47 229 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 LINC00205P59089 165 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 OR10K2Q6IF99 312 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 ZNF880Q6PDB4 577 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 MOB1BQ7L9L4 216 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 ZNF383Q8NA42 475 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 SNAPC3Q92966 411 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 TMEM80Q96HE8 168 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 USMG5Q96IX5 58 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 TMEM59Q9BXS4 323 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 TINAGL1Q9GZM7 467 aaPredicted RBP11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 COA4Q9NYJ1 87 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 OR1A1Q9P1Q5 309 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 ZNF221Q9UK13 617 aa11.85□□□□□ -0.51
PDLIM3-213ENST00000629667 A0A0B4J203 849 aa11.84□□□□□ -0.51
PDLIM3-213ENST00000629667 PROP1O75360 226 aa11.84□□□□□ -0.51
PDLIM3-213ENST00000629667 BRI3O95415 125 aa11.84□□□□□ -0.51
PDLIM3-213ENST00000629667 HTR2CP28335 458 aa11.84□□□□□ -0.51
PDLIM3-213ENST00000629667 TAS2R43P59537 309 aa11.84□□□□□ -0.51
PDLIM3-213ENST00000629667 RPS27AP62979 156 aaKnown RBP11.84□□□□□ -0.51
PDLIM3-213ENST00000629667 SSBP2P81877 361 aaPredicted RBP11.84□□□□□ -0.51
PDLIM3-213ENST00000629667 DYRK1AQ13627 763 aa11.84□□□□□ -0.51
PDLIM3-213ENST00000629667 LAX1Q8IWV1 398 aa11.84□□□□□ -0.51
PDLIM3-213ENST00000629667 ZNF555Q8NEP9 628 aa11.84□□□□□ -0.51
PDLIM3-213ENST00000629667 LINC00476Q8WZB0 136 aa11.84□□□□□ -0.51
PDLIM3-213ENST00000629667 PLEKHJ1Q9NW61 149 aa11.84□□□□□ -0.51
PDLIM3-213ENST00000629667 RBMY1BA6NDE4 496 aaKnown RBP11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 RBMY1EA6NEQ0 496 aaKnown RBP11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 AIREO43918 545 aa11.83□□□□□ -0.52
PDLIM3-213ENST00000629667 LY6G6CO95867 125 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms