RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 CRYAAP02489 173 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 C1QTNF9P0C862 333 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 GNB1P62873 340 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 FOXL1Q12952 345 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 PCOLCEQ15113 449 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 TPTE2P1Q5T6R2 138 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 SLC23A3Q6PIS1 610 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 TEX43Q6ZNM6 134 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 ELOVL5Q9NYP7 299 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 MUC3AQ02505 3323 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 GRIFINA4D1Z8 144 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.92□□□□□ -0.5
LDB3-209ENST00000623056 DNPH1O43598 174 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 SELEP16581 610 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 SPINK2P20155 84 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 CCNOP22674 350 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 TNFSF10P50591 281 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 CARD18P57730 90 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 MRPS11P82912 194 aaKnown RBP11.92□□□□□ -0.5
LDB3-209ENST00000623056 FGFRL1Q8N441 504 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 SGMS2Q8NHU3 365 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 RARRES3Q9UL19 164 aa11.92□□□□□ -0.5
LDB3-209ENST00000623056 RBM7Q9Y580 266 aaKnown RBP11.92□□□□□ -0.5
LDB3-209ENST00000623056 DOCK11Q5JSL3 2073 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 NPIPB11E5RHQ5 1161 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 TMPRSS2O15393 492 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 WDR1O75083 606 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 ATP6V1FQ16864 119 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 HLA-BQ31612 363 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 PRR18Q8N4B5 295 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 OR5P3Q8WZ94 311 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 SGCZQ96LD1 299 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 CDX2Q99626 313 aaPredicted RBP11.91□□□□□ -0.5
LDB3-209ENST00000623056 DERL1Q9BUN8 251 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 NPCDR1Q9BY65 106 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 TP53TG3Q9ULZ0 132 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 PGPEP1LA6NFU8 196 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 TOX3O15405 576 aaPredicted RBP11.91□□□□□ -0.5
LDB3-209ENST00000623056 CXCL13O43927 109 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 CCL2P13500 99 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 BMP5P22003 454 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 B3GALT5-AS1P59052 145 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 TPPP2P59282 170 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 RIPPLY2Q5TAB7 128 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 LINC00596Q86U02 117 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 ZNF114Q8NC26 417 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 OR2J1Q9GZK6 312 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 DLL3Q9NYJ7 618 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 CLN8Q9UBY8 286 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 PAM16Q9Y3D7 125 aa11.91□□□□□ -0.5
LDB3-209ENST00000623056 NDUFB4O95168 129 aa11.9□□□□□ -0.5
LDB3-209ENST00000623056 IGHV3-9P01782 118 aa11.9□□□□□ -0.5
LDB3-209ENST00000623056 ATP5G3P48201 142 aa11.9□□□□□ -0.5
LDB3-209ENST00000623056 LINC00310P59036 64 aa11.9□□□□□ -0.5
LDB3-209ENST00000623056 YPEL3P61236 119 aaPredicted RBP11.9□□□□□ -0.5
LDB3-209ENST00000623056 RPS16P62249 146 aaKnown RBP11.9□□□□□ -0.5
LDB3-209ENST00000623056 BATFQ16520 125 aa11.9□□□□□ -0.5
LDB3-209ENST00000623056 TMEM183BQ1AE95 376 aa11.9□□□□□ -0.5
LDB3-209ENST00000623056 MRPL21Q7Z2W9 205 aaKnown RBP11.9□□□□□ -0.5
LDB3-209ENST00000623056 NUFIP2Q7Z417 695 aaKnown RBP11.9□□□□□ -0.5
LDB3-209ENST00000623056 YRDCQ86U90 279 aaKnown RBP11.9□□□□□ -0.5
LDB3-209ENST00000623056 GGNQ86UU5 652 aa11.9□□□□□ -0.5
LDB3-209ENST00000623056 OR1L1Q8NH94 360 aa11.9□□□□□ -0.5
LDB3-209ENST00000623056 UBALD1Q8TB05 177 aa11.9□□□□□ -0.5
LDB3-209ENST00000623056 PRDM6Q9NQX0 595 aa11.9□□□□□ -0.5
LDB3-209ENST00000623056 HSPB7Q9UBY9 170 aa11.9□□□□□ -0.5
LDB3-209ENST00000623056 PMS2P5A8MQ11 134 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 PDE6DO43924 150 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 CBR3O75828 277 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 IL6RP08887 468 aaPredicted RBP11.89□□□□□ -0.51
LDB3-209ENST00000623056 CDKN1AP38936 164 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 PCP4P48539 62 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 CDC34P49427 236 aaPredicted RBP11.89□□□□□ -0.51
LDB3-209ENST00000623056 UBE2G2P60604 165 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 PAFAH1B2P68402 229 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 SFRP2Q96HF1 295 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 OPN3Q9H1Y3 402 aaPredicted RBP11.89□□□□□ -0.51
LDB3-209ENST00000623056 OR51B6Q9H340 312 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 ZNF552Q9H707 407 aaPredicted RBP11.89□□□□□ -0.51
LDB3-209ENST00000623056 ZDHHC11Q9H8X9 412 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 DIDO1Q9BTC0 2240 aaKnown RBP11.89□□□□□ -0.51
LDB3-209ENST00000623056 RBFOX2O43251 390 aaKnown RBP eCLIP11.89□□□□□ -0.51
LDB3-209ENST00000623056 UMODP07911 640 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 SSR4P51571 173 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 MLF1P58340 268 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 SELENOTP62341 195 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 DMRTA1Q5VZB9 504 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 MRPL14Q6P1L8 145 aaKnown RBP11.89□□□□□ -0.51
LDB3-209ENST00000623056 DRAM1Q8N682 238 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 ZNF709Q8N972 641 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 OR5A2Q8NGI9 324 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 GUCD1Q96NT3 240 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 HSPB9Q9BQS6 159 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 PATZ1Q9HBE1 687 aaKnown RBP11.89□□□□□ -0.51
LDB3-209ENST00000623056 SH2D2AQ9NP31 389 aa11.89□□□□□ -0.51
LDB3-209ENST00000623056 RYDENQ9NUL5 291 aaKnown RBP11.89□□□□□ -0.51
LDB3-209ENST00000623056 TNRC6BQ9UPQ9 1833 aaKnown RBP11.89□□□□□ -0.51
LDB3-209ENST00000623056 RANP62826 216 aaKnown RBP11.88□□□□□ -0.51
LDB3-209ENST00000623056 OR10P1Q8NGE3 313 aa11.88□□□□□ -0.51
LDB3-209ENST00000623056 VAMP8Q9BV40 100 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms