RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 C5orf30Q96GV9 206 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 ZNF221Q9UK13 617 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 RNF150Q9ULK6 438 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 GAB2Q9UQC2 676 aa15.87■□□□□ 0.13
UPF3A-211ENST00000618700 IGHV1-3A0A0C4DH29 117 aa15.86■□□□□ 0.13
UPF3A-211ENST00000618700 DNAJC9-AS1A6NH13 148 aa15.86■□□□□ 0.13
UPF3A-211ENST00000618700 TIMM23O14925 209 aa15.86■□□□□ 0.13
UPF3A-211ENST00000618700 RAB3DO95716 219 aa15.86■□□□□ 0.13
UPF3A-211ENST00000618700 IGHV4-59P01825 116 aa15.86■□□□□ 0.13
UPF3A-211ENST00000618700 AKAIN1P0CW23 69 aa15.86■□□□□ 0.13
UPF3A-211ENST00000618700 RELBQ01201 579 aa15.86■□□□□ 0.13
UPF3A-211ENST00000618700 CFHR4Q92496 578 aa15.86■□□□□ 0.13
UPF3A-211ENST00000618700 MOB3AQ96BX8 217 aa15.86■□□□□ 0.13
UPF3A-211ENST00000618700 S1PR3Q99500 378 aa15.86■□□□□ 0.13
UPF3A-211ENST00000618700 SSX3Q99909 188 aa15.86■□□□□ 0.13
UPF3A-211ENST00000618700 ZNF2Q9BSG1 426 aaPredicted RBP15.86■□□□□ 0.13
UPF3A-211ENST00000618700 MRPL20Q9BYC9 149 aaKnown RBP15.86■□□□□ 0.13
UPF3A-211ENST00000618700 FXYD6Q9H0Q3 95 aa15.86■□□□□ 0.13
UPF3A-211ENST00000618700 RBM7Q9Y580 266 aaKnown RBP15.86■□□□□ 0.13
UPF3A-211ENST00000618700 J3QRK9 145 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 HOXA3O43365 443 aaPredicted RBP15.85■□□□□ 0.13
UPF3A-211ENST00000618700 IGLV2-14P01704 120 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 ZNF735P0CB33 412 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 ARHGDIBP52566 201 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 AP3S2P59780 193 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 BAMBIQ13145 260 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 MEF2DQ14814 521 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 LHFPL1Q86WI0 220 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 PRIMA1Q86XR5 153 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 TMEM86BQ8N661 226 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 ZNF645Q8N7E2 425 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 ZDHHC22Q8N966 263 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 OR4C16Q8NGL9 310 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 OR6F1Q8NGZ6 308 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 WDR12Q9GZL7 423 aaKnown RBP15.85■□□□□ 0.13
UPF3A-211ENST00000618700 SDHAF2Q9NX18 166 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 POMT1Q9Y6A1 747 aa15.85■□□□□ 0.13
UPF3A-211ENST00000618700 H3BUX3 64 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 CLDN34H7C241 214 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 TCF21O43680 179 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 IFNA6P05013 189 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 IL7P13232 177 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 HERV-K104P61576 105 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 TSPAN5P62079 268 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 SLC9A3R2Q15599 337 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 MSMO1Q15800 293 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 FAAP20Q6NZ36 180 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 TOMM5Q8N4H5 51 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 DRAM1Q8N682 238 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 OR56B4Q8NH76 319 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 OR5R1Q8NH85 324 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 DEDD2Q8WXF8 326 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 NABP2Q9BQ15 211 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 DPAGT1Q9H3H5 408 aa15.84■□□□□ 0.13
UPF3A-211ENST00000618700 FAM90A9PA6NNJ1 464 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 SLC22A5O76082 557 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 VENTXO95231 258 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 IFNA2P01563 188 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 AMY2AP04746 511 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 CT45A6P0DMU7 189 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 CT45A5P0DMU8 189 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 CT45A7P0DMV0 189 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 CD40LGP29965 261 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 BRS3P32247 399 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 RAB13P51153 203 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 FXYD4P59646 89 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 LSAMPQ13449 338 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 ZNF846Q147U1 533 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 AADACL3Q5VUY0 350 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 TRIQKQ629K1 86 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 TMEM17Q86X19 198 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 SECTM1Q8WVN6 248 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 JMJD8Q96S16 334 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 CCDC32Q9BV29 185 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 ABCB10Q9NRK6 738 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 TCF19Q9Y242 345 aa15.83■□□□□ 0.12
UPF3A-211ENST00000618700 OR5H14A6NHG9 310 aa15.82■□□□□ 0.12
UPF3A-211ENST00000618700 PPP5CP53041 499 aa15.82■□□□□ 0.12
UPF3A-211ENST00000618700 EIF4EBP1Q13541 118 aaPredicted RBP15.82■□□□□ 0.12
UPF3A-211ENST00000618700 FBLN7Q53RD9 439 aa15.82■□□□□ 0.12
UPF3A-211ENST00000618700 MOB3BQ86TA1 216 aa15.82■□□□□ 0.12
UPF3A-211ENST00000618700 SLC5A7Q9GZV3 580 aa15.82■□□□□ 0.12
UPF3A-211ENST00000618700 SLC2A8Q9NY64 477 aa15.82■□□□□ 0.12
UPF3A-211ENST00000618700 VPREB3Q9UKI3 123 aa15.82■□□□□ 0.12
UPF3A-211ENST00000618700 IGHV3-72A0A0B4J1Y9 119 aa15.81■□□□□ 0.12
UPF3A-211ENST00000618700 M0R1X1 148 aa15.81■□□□□ 0.12
UPF3A-211ENST00000618700 CD1BP29016 333 aa15.81■□□□□ 0.12
UPF3A-211ENST00000618700 UCP3P55916 312 aa15.81■□□□□ 0.12
UPF3A-211ENST00000618700 UBA52P62987 128 aaKnown RBP15.81■□□□□ 0.12
UPF3A-211ENST00000618700 THNSL2Q86YJ6 484 aa15.81■□□□□ 0.12
UPF3A-211ENST00000618700 DUX5Q96PT3 197 aa15.81■□□□□ 0.12
UPF3A-211ENST00000618700 HRASLSQ9HDD0 168 aa15.81■□□□□ 0.12
UPF3A-211ENST00000618700 CCL28Q9NRJ3 127 aa15.81■□□□□ 0.12
UPF3A-211ENST00000618700 A6NDX4 124 aa15.8■□□□□ 0.12
UPF3A-211ENST00000618700 BTBD17A6NE02 478 aa15.8■□□□□ 0.12
UPF3A-211ENST00000618700 DISC1C4P0D8 188 aa15.8■□□□□ 0.12
UPF3A-211ENST00000618700 H0YJW9 148 aa15.8■□□□□ 0.12
UPF3A-211ENST00000618700 RNASE1P07998 156 aaKnown RBP15.8■□□□□ 0.12
UPF3A-211ENST00000618700 SNRNP70P08621 437 aaKnown RBP15.8■□□□□ 0.12
UPF3A-211ENST00000618700 CD24P25063 80 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms