RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 LY6G6FQ5SQ64 297 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 C11orf88Q6PI97 169 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 C3orf56Q8N813 242 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 C5orf56Q8N8D9 126 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 OR4F5Q8NH21 305 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 ACOT12Q8WYK0 555 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 NOL4LQ96MY1 436 aaPredicted RBP10.7□□□□□ -0.7
LINC00540-202ENST00000616974 RAB9BQ9NP90 201 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 RAB29O14966 203 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 RANBP1P43487 201 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 GPR12P47775 334 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 DGCR2P98153 550 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 PITPNAQ00169 270 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 OR52I2Q8NH67 350 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 GPX8Q8TED1 209 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 HSPB9Q9BQS6 159 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 MGAT4AQ9UM21 535 aa10.7□□□□□ -0.7
LINC00540-202ENST00000616974 NCBP2LA6PVI3 153 aaKnown RBP10.69□□□□□ -0.7
LINC00540-202ENST00000616974 H0YJW9 148 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 M0R1X1 148 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 TMEM127O75204 238 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 FAM106CPP0CH98 169 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 VSIG10L2P0DP72 767 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 AADACP22760 399 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 PRSS3P35030 304 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 SRSF7Q16629 238 aaKnown RBP eCLIP10.69□□□□□ -0.7
LINC00540-202ENST00000616974 Q8N9W7 124 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 NPFFR1Q9GZQ6 430 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 C16orf95Q9H693 158 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 BEX1Q9HBH7 125 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 TPSG1Q9NRR2 321 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 CCDC59Q9P031 241 aaKnown RBP10.69□□□□□ -0.7
LINC00540-202ENST00000616974 RSL24D1Q9UHA3 163 aaKnown RBP10.69□□□□□ -0.7
LINC00540-202ENST00000616974 PITPNC1Q9UKF7 332 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 ANAPC10Q9UM13 185 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 TUSC2O75896 110 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 IL3RAP26951 378 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 FCGR2CP31995 323 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 ACTBP60709 375 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 RPL30P62888 115 aaKnown RBP10.69□□□□□ -0.7
LINC00540-202ENST00000616974 ARL6IP1Q15041 203 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 FAM71E2Q8N5Q1 922 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 KLHDC1Q8N7A1 406 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 OR4D10Q8NGI6 311 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 OR4C13Q8NGP0 309 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 EDARADDQ8WWZ3 215 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 AP3S1Q92572 193 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 PIPOXQ9P0Z9 390 aa10.69□□□□□ -0.7
LINC00540-202ENST00000616974 M0QYG6 137 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 TNFSF12O43508 249 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 MOSP00540 346 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 OR5H8P0DN80 308 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 CD1BP29016 333 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 HRH1P35367 487 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 BRWD1-AS2P59051 145 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 FXYD4P59646 89 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 ARPC4P59998 168 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 RPL15P61313 204 aaKnown RBP10.68□□□□□ -0.7
LINC00540-202ENST00000616974 OR2B11Q5JQS5 317 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 ZNF660Q6AZW8 331 aaPredicted RBP10.68□□□□□ -0.7
LINC00540-202ENST00000616974 FAAP20Q6NZ36 180 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 THNSL2Q86YJ6 484 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 Q8N2B8 174 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 MOB4Q9Y3A3 225 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 OR2W1Q9Y3N9 320 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 MMP24Q9Y5R2 645 aa10.68□□□□□ -0.7
LINC00540-202ENST00000616974 POM121CA8CG34 1229 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 ITGB1BP1O14713 200 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 SOX6P35712 828 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 MZT2AQ6P582 158 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 TMEM17Q86X19 198 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 OR5AP2Q8NGF4 316 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 OR2T10Q8NGZ9 312 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 BCL7BQ9BQE9 202 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 NXF2Q9GZY0 626 aaKnown RBP10.67□□□□□ -0.7
LINC00540-202ENST00000616974 IFT46Q9NQC8 304 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 CCL28Q9NRJ3 127 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 ZNF107Q9UII5 783 aaPredicted RBP10.67□□□□□ -0.7
LINC00540-202ENST00000616974 RBM7Q9Y580 266 aaKnown RBP10.67□□□□□ -0.7
LINC00540-202ENST00000616974 FCN1O00602 326 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 TNFSF8P32971 234 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 NDPQ00604 133 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 MMDQ15546 238 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 TCTEX1D4Q5JR98 221 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 LIAT1Q6ZQX7 453 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 LCNL1Q6ZST4 164 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 ZNF329Q86UD4 541 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 OR5AN1Q8NGI8 311 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 OR2T6Q8NHC8 308 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 MCFD2Q8NI22 146 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 WIPF2Q8TF74 440 aaPredicted RBP10.67□□□□□ -0.7
LINC00540-202ENST00000616974 SECTM1Q8WVN6 248 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 DIRAS2Q96HU8 199 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 S1PR3Q99500 378 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 ZNF747Q9BV97 191 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 EHFQ9NZC4 300 aa10.67□□□□□ -0.7
LINC00540-202ENST00000616974 SRRM4A7MD48 611 aaKnown RBP10.66□□□□□ -0.7
LINC00540-202ENST00000616974 H7C2Y5 167 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 NOL3O60936 208 aaKnown RBP10.66□□□□□ -0.7
LINC00540-202ENST00000616974 ARHGDIBP52566 201 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms