RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 FAM90A20PA6NIJ5 464 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM90A8PA6NJQ4 464 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM90A7PA6NKC0 464 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM90A22PA8MWA6 464 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM90A12PA8MX19 464 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM90A5PA8MXJ8 464 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM90A23PA8MXZ1 464 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 G3V3Q6 166 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 REG1AP05451 166 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM90A15PP0C7V4 464 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM90A13PP0C7W8 464 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM90A14PP0C7W9 464 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM90A24PP0C7X0 464 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 NAAAQ02083 359 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 ZNF880Q6PDB4 577 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 TMEM56Q96MV1 263 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 WDFY4Q6ZS81 3184 aa7.58□□□□□ -1.2
PDLIM5-222ENST00000615540 SLC25A5P05141 298 aaKnown RBP7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM87AP0C7U9 286 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 HLA-GP17693 338 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 OR13A1Q8NGR1 328 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 C18orf12Q96KH6 178 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 ZNF714Q96N38 554 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 CTRB1P17538 263 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 RPL31P62899 125 aaKnown RBP7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 FABP9Q0Z7S8 132 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 P2RY6Q15077 328 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 PSG5Q15238 335 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 CTRB2Q6GPI1 263 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 RYDENQ9NUL5 291 aaKnown RBP7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 CACFD1Q9UGQ2 172 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 PRRX1P54821 245 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 GFRA1P56159 465 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 KDF1Q8NAX2 398 aaPredicted RBP7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 BSCL2Q96G97 398 aaPredicted RBP7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 ABHD17AQ96GS6 310 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 TLNRD1Q9H1K6 362 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 ZNF331Q9NQX6 463 aaPredicted RBP7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 CALYQ9NYX4 217 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 MRPS18CQ9Y3D5 142 aaKnown RBP7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 LDLRAD4O15165 306 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 PTBP3O95758 552 aaKnown RBP7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 HABP2Q14520 560 aaPredicted RBP7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 PROK2Q9HC23 129 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 HPRT1P00492 218 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 GNG4P50150 75 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 QRFPP83859 136 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 ATP6V1FQ16864 119 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 C16orf82Q7Z2V1 217 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 SH2D2AQ9NP31 389 aa7.57□□□□□ -1.2
PDLIM5-222ENST00000615540 HOXA6P31267 233 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 TCL1AP56279 114 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 HOXA4Q00056 320 aaPredicted RBP7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 KRTCAP3Q53RY4 240 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 C1QTNF12Q5T7M4 302 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 FLYWCH2Q96CP2 140 aaKnown RBP7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 RAB1BQ9H0U4 201 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 ZDHHC11Q9H8X9 412 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 HILPDAQ9Y5L2 63 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 MUC22E2RYF6 1773 aaPredicted RBP7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 TRAV24A0A0B4J272 114 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 NTF3P20783 257 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 DHRS11Q6UWP2 260 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 FAM210BQ96KR6 192 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 NAT8Q9UHE5 227 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 ODAMA1E959 279 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 XKRY2A2RUG3 117 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 C12orf77C9JDV5 145 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 RAB29O14966 203 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 SS18L1O75177 396 aaPredicted RBP7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 TIGITQ495A1 244 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 LRP11Q86VZ4 500 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 ASCL3Q9NQ33 180 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 TGIF2-C20orf24A0A0A6YYL0 155 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 DUXBA0A1W2PPF3 345 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 C19orf67A6NJJ6 358 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 J3QR06 171 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 K7N7A8 449 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 RHOBP62745 196 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 SNX22Q96L94 193 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 WFDC1Q9HC57 220 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 FKBP11Q9NYL4 201 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 C17orf98A8MV24 154 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 H0YIZ8 118 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 MGST3O14880 152 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 RAMP3O60896 148 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 IGHV3-48P01763 117 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 CD1BP29016 333 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 CNN1P51911 297 aaKnown RBP7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 DEFA6Q01524 100 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 HIST3H3Q16695 136 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 H1FOOQ8IZA3 346 aaPredicted RBP7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 TUBG2Q9NRH3 451 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 TMEM140Q9NV12 185 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 IDI2-AS1Q9NZ38 188 aa7.56□□□□□ -1.2
PDLIM5-222ENST00000615540 ZNF66Q6ZN08 573 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 ZCCHC24Q8N2G6 241 aaKnown RBP7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 OR10D4PQ8NGN7 298 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 MANBALQ9NQG1 85 aa7.55□□□□□ -1.2
PDLIM5-222ENST00000615540 VAX2Q9UIW0 290 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms