RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 FCGR3AP08637 254 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 ZNF17P17021 662 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 NTF3P20783 257 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 CFHR2P36980 270 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 SULT1A1P50225 295 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 CATR1Q13166 79 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 PHF3Q92576 2039 aaKnown RBP8.97□□□□□ -0.97
LIG1-220ENST00000601091 TMEM265A0A087WTH1 108 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 VENTXO95231 258 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 PAFAH1B2P68402 229 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 PRDX4Q13162 271 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 SLC25A53Q5H9E4 307 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 Q6ZN92 141 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 DNM1P46Q6ZS02 220 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 POC1AQ8NBT0 407 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 OR10S1Q8NGN2 331 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 SDSLQ96GA7 329 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 VAMP8Q9BV40 100 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 OR2H1Q9GZK4 316 aa8.97□□□□□ -0.97
LIG1-220ENST00000601091 AKIRIN1Q9H9L7 192 aaPredicted RBP8.97□□□□□ -0.97
LIG1-220ENST00000601091 FANCMQ8IYD8 2048 aa8.96□□□□□ -0.97
LIG1-220ENST00000601091 HLA-HP01893 362 aa8.96□□□□□ -0.97
LIG1-220ENST00000601091 HKR1P10072 659 aa8.96□□□□□ -0.97
LIG1-220ENST00000601091 TNXAQ16473 311 aa8.96□□□□□ -0.97
LIG1-220ENST00000601091 TMEM41BQ5BJD5 291 aa8.96□□□□□ -0.97
LIG1-220ENST00000601091 OR5C1Q8NGR4 320 aa8.96□□□□□ -0.97
LIG1-220ENST00000601091 ZNF524Q96C55 264 aa8.96□□□□□ -0.97
LIG1-220ENST00000601091 GNG13Q9P2W3 67 aa8.96□□□□□ -0.97
LIG1-220ENST00000601091 OSGIN2Q9Y236 505 aa8.96□□□□□ -0.97
LIG1-220ENST00000601091 TRIOBPQ9H2D6 2365 aa8.96□□□□□ -0.97
LIG1-220ENST00000601091 SVILO95425 2214 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 DIDO1Q9BTC0 2240 aaKnown RBP8.96□□□□□ -0.98
LIG1-220ENST00000601091 A0A1W2PRX2 142 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 H3BP45 60 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 C10orf128Q5T292 105 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 DHRS11Q6UWP2 260 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 RAB39BQ96DA2 213 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 MRAP2Q96G30 205 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 RNF126Q9BV68 326 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 RTL8AQ9BWD3 113 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 POLDIP2Q9Y2S7 368 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 COX11Q9Y6N1 276 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 CFAP54Q96N23 3096 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 CRYM-AS1A6NIL9 109 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 HIST1H2BKO60814 126 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 HIST1H2BJP06899 126 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 SCGB1A1P11684 91 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 HIST1H2BOP23527 126 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 HIST1H2BBP33778 126 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 HIST1H2BDP58876 126 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 HIST1H2BCP62807 126 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 RANP62826 216 aaKnown RBP8.96□□□□□ -0.98
LIG1-220ENST00000601091 HIST2H2BEQ16778 126 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 TBC1D28Q2M2D7 210 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.96□□□□□ -0.98
LIG1-220ENST00000601091 HIST1H2BHQ93079 126 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 Q96M66 194 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 HIST1H2BNQ99877 126 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 HIST1H2BMQ99879 126 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 FAM173AQ9BQD7 235 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 MIEN1Q9BRT3 115 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 RTBDNQ9BSG5 229 aaPredicted RBP8.96□□□□□ -0.98
LIG1-220ENST00000601091 OR1A1Q9P1Q5 309 aa8.96□□□□□ -0.98
LIG1-220ENST00000601091 IGHV2-70DA0A0C4DH43 119 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 CEBPZOSA8MTT3 80 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 C1QL1O75973 258 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 FGF5P12034 268 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 AMTP48728 403 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 SEC61GP60059 68 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 TMEM267Q0VDI3 215 aaPredicted RBP8.95□□□□□ -0.98
LIG1-220ENST00000601091 OR8B8Q15620 311 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 LCN15Q6UWW0 184 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 GUCD1Q96NT3 240 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 LRFN3Q9BTN0 628 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 GPR35Q9HC97 309 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 ZNF319Q9P2F9 582 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 NUP210Q8TEM1 1887 aaPredicted RBP8.95□□□□□ -0.98
LIG1-220ENST00000601091 VPS13AQ96RL7 3174 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 IGHV1-45A0A0A0MS14 117 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 SLC17A3O00476 420 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 VDAC1P21796 283 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 LPAR6P43657 344 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 PSG4Q00888 419 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 SPANXN5Q5MJ07 72 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 TBC1D26Q86UD7 250 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 TMEM123Q8N131 208 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 CNEP1R1Q8N9A8 125 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 ZDHHC11Q9H8X9 412 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 EFNA2O43921 213 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 GRPP07492 148 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 ZNF708P17019 499 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 TIMP3P35625 211 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 ELLP55199 621 aaPredicted RBP8.95□□□□□ -0.98
LIG1-220ENST00000601091 ENDOGQ14249 297 aaKnown RBP8.95□□□□□ -0.98
LIG1-220ENST00000601091 PCOLCEQ15113 449 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 C1orf194Q5T5A4 169 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 GBGT1Q8N5D6 347 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 STPG4Q8N801 248 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 ST6GALNAC6Q969X2 333 aa8.95□□□□□ -0.98
LIG1-220ENST00000601091 LYRM2Q9NU23 88 aaPredicted RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms