RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 MARCH1Q8TCQ1 289 aa12.13□□□□□ -0.47
TRIM28-207ENST00000597136 SECTM1Q8WVN6 248 aa12.13□□□□□ -0.47
TRIM28-207ENST00000597136 TOMM40LQ969M1 308 aa12.13□□□□□ -0.47
TRIM28-207ENST00000597136 TNFRSF19Q9NS68 423 aa12.13□□□□□ -0.47
TRIM28-207ENST00000597136 RNF150Q9ULK6 438 aa12.13□□□□□ -0.47
TRIM28-207ENST00000597136 FAM96BQ9Y3D0 163 aa12.13□□□□□ -0.47
TRIM28-207ENST00000597136 RBM7Q9Y580 266 aaKnown RBP12.13□□□□□ -0.47
TRIM28-207ENST00000597136 DNAJC9-AS1A6NH13 148 aa12.12□□□□□ -0.47
TRIM28-207ENST00000597136 HOXA3O43365 443 aaPredicted RBP12.12□□□□□ -0.47
TRIM28-207ENST00000597136 TCRBP04435 133 aa12.12□□□□□ -0.47
TRIM28-207ENST00000597136 SPNP16150 400 aa12.12□□□□□ -0.47
TRIM28-207ENST00000597136 ECI1P42126 302 aa12.12□□□□□ -0.47
TRIM28-207ENST00000597136 RAB7AP51149 207 aa12.12□□□□□ -0.47
TRIM28-207ENST00000597136 BAMBIQ13145 260 aa12.12□□□□□ -0.47
TRIM28-207ENST00000597136 SLC5A7Q9GZV3 580 aa12.12□□□□□ -0.47
TRIM28-207ENST00000597136 IFI27L2Q9H2X8 130 aa12.12□□□□□ -0.47
TRIM28-207ENST00000597136 COPZ2Q9P299 210 aa12.12□□□□□ -0.47
TRIM28-207ENST00000597136 TOR1AO14656 332 aa12.11□□□□□ -0.47
TRIM28-207ENST00000597136 IGLV1-47P01700 117 aa12.11□□□□□ -0.47
TRIM28-207ENST00000597136 PGAM2P15259 253 aa12.11□□□□□ -0.47
TRIM28-207ENST00000597136 GNRHRP30968 328 aa12.11□□□□□ -0.47
TRIM28-207ENST00000597136 PRRX1P54821 245 aa12.11□□□□□ -0.47
TRIM28-207ENST00000597136 LGALS4P56470 323 aa12.11□□□□□ -0.47
TRIM28-207ENST00000597136 SURF2Q15527 256 aaPredicted RBP12.11□□□□□ -0.47
TRIM28-207ENST00000597136 SLC9A3R2Q15599 337 aa12.11□□□□□ -0.47
TRIM28-207ENST00000597136 RBMS3Q6XE24 437 aaKnown RBP12.11□□□□□ -0.47
TRIM28-207ENST00000597136 BEND2Q8NDZ0 799 aa12.11□□□□□ -0.47
TRIM28-207ENST00000597136 ABHD14BQ96IU4 210 aa12.11□□□□□ -0.47
TRIM28-207ENST00000597136 OR2D2Q9H210 308 aa12.11□□□□□ -0.47
TRIM28-207ENST00000597136 GPR132Q9UNW8 380 aa12.11□□□□□ -0.47
TRIM28-207ENST00000597136 VSIG4Q9Y279 399 aa12.11□□□□□ -0.47
TRIM28-207ENST00000597136 PLXNB1O43157 2135 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 A0A0A6YYJ9 748 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 IGLV2-14P01704 120 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 IGHV4-59P01825 116 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 FBP1P09467 338 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 SSX2Q16385 188 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 KRTAP24-1Q3LI83 254 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 LPCAT3Q6P1A2 487 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 ZNF818PQ6ZRF7 136 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 ODF3L1Q8IXM7 274 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 SLC38A6Q8IZM9 456 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 OR4P4Q8NGL7 312 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 OR10X1Q8NGY0 326 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 ZFAND1Q8TCF1 268 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 TAF15Q92804 592 aaKnown RBP eCLIP12.1□□□□□ -0.47
TRIM28-207ENST00000597136 SCGB3A2Q96PL1 93 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 RSRP1Q9BUV0 290 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 MMP28Q9H239 520 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 CCL28Q9NRJ3 127 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 NUDT15Q9NV35 164 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 ZNF221Q9UK13 617 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 FLVCR2Q9UPI3 526 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 HILPDAQ9Y5L2 63 aa12.1□□□□□ -0.47
TRIM28-207ENST00000597136 SLC22A5O76082 557 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 PI3P19957 117 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 IER3P46695 156 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 RAB13P51153 203 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 OXA1LQ15070 435 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 HLA-DRB5Q30154 266 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 PLET1Q6UQ28 207 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 CCBE1Q6UXH8 406 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-207ENST00000597136 LYG1Q8N1E2 194 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 DRAM1Q8N682 238 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 ZNF645Q8N7E2 425 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 CHPT1Q8WUD6 406 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 MDFIQ99750 246 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 RTBDNQ9BSG5 229 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-207ENST00000597136 C20orf85Q9H1P6 137 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 MEGF9Q9H1U4 602 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 GHITMQ9H3K2 345 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 C5orf66Q9H5L9 145 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 NUBP2Q9Y5Y2 271 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 TRAV6A0A075B6T7 132 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 HSD17B6O14756 317 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 RAB29O14966 203 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 RLN1P04808 185 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 CTSDP07339 412 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-207ENST00000597136 GPR12P47775 334 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 UBA52P62987 128 aaKnown RBP12.09□□□□□ -0.47
TRIM28-207ENST00000597136 TRIM16LQ309B1 348 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 BVESQ8NE79 360 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 CREB3L1Q96BA8 519 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 C5orf30Q96GV9 206 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 SSX3Q99909 188 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 SDHAF2Q9NX18 166 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 PIPOXQ9P0Z9 390 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 GAB2Q9UQC2 676 aa12.09□□□□□ -0.47
TRIM28-207ENST00000597136 TBL2Q9Y4P3 447 aaKnown RBP12.09□□□□□ -0.47
TRIM28-207ENST00000597136 SAA2-SAA4A0A096LPE2 208 aa12.08□□□□□ -0.48
TRIM28-207ENST00000597136 LY6LH3BQJ8 138 aa12.08□□□□□ -0.48
TRIM28-207ENST00000597136 BUB1B-PAK6H3BSN5 160 aa12.08□□□□□ -0.48
TRIM28-207ENST00000597136 GPR31O00270 319 aa12.08□□□□□ -0.48
TRIM28-207ENST00000597136 ARPC1BO15143 372 aaKnown RBP12.08□□□□□ -0.48
TRIM28-207ENST00000597136 PROP1O75360 226 aa12.08□□□□□ -0.48
TRIM28-207ENST00000597136 H2AFB2P0C5Z0 115 aa12.08□□□□□ -0.48
TRIM28-207ENST00000597136 SAA2P0DJI9 122 aaPredicted RBP12.08□□□□□ -0.48
TRIM28-207ENST00000597136 HTR1DP28221 377 aa12.08□□□□□ -0.48
TRIM28-207ENST00000597136 ZNF137PP52743 207 aa12.08□□□□□ -0.48
TRIM28-207ENST00000597136 DIAPH2-AS1Q14236 149 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms