RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CCL28Q9NRJ3 127 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 HILPDAQ9Y5L2 63 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 SOX21Q9Y651 276 aaPredicted RBP8.36□□□□□ -1.07
LIG3-216ENST00000593099 TRBV23-1A0A0A0MS06 115 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 CLEC18AA5D8T8 446 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 LEUTXA8MZ59 168 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 C10orf142B7Z368 130 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 PPP5D1E7EU14 171 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 H0YL77 283 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 FAM201AQ5SY85 155 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 FAM90A1Q86YD7 464 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 CLEC18CQ8NCF0 446 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 Q96M66 194 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 HARBI1Q96MB7 349 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 VCX2Q9H322 139 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 PSENENQ9NZ42 101 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 MPDZO75970 2070 aa8.36□□□□□ -1.07
LIG3-216ENST00000593099 TRAV34A0A0B4J273 112 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 IL5P05113 134 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 WNT5AP41221 380 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 REG1BP48304 166 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 TAS2R30P59541 319 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 NCMAPQ5T1S8 102 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 ZNRF1Q8ND25 227 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 A0A0B4J2A0 478 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 A0A1W2PN81 502 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 DPRXA6NFQ7 191 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 ZFP92A6NM28 416 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 GIPP09681 153 aaPredicted RBP8.35□□□□□ -1.07
LIG3-216ENST00000593099 NTF3P20783 257 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 PSMB6P28072 239 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 CHRNA7P36544 502 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 RELQ04864 619 aaPredicted RBP8.35□□□□□ -1.07
LIG3-216ENST00000593099 DHRS11Q6UWP2 260 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 OR9G1Q8NH87 305 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 R3HDM4Q96D70 268 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 NRIP2Q9BQI9 281 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 NIPSNAP3BQ9BS92 247 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 SEBOXQ9HB31 216 aaPredicted RBP8.35□□□□□ -1.07
LIG3-216ENST00000593099 SHPKQ9UHJ6 478 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 FAM215AQ9Y5M1 114 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 LRRK1Q38SD2 2015 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 FREM3P0C091 2139 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 E5RGE8 158 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 CDS2O95674 445 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 C1QBP02746 253 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 FAM106CPP0CH98 169 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 MGST1P10620 155 aaKnown RBP8.35□□□□□ -1.07
LIG3-216ENST00000593099 FCER1GP30273 86 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 MC5RP33032 325 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 LGALS7P47929 136 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 WDR73Q6P4I2 378 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 GAPTQ8N292 157 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 TCTEX1D1Q8N7M0 179 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 OR52L2PQ8NGH6 319 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 OR10S1Q8NGN2 331 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 MOB3AQ96BX8 217 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 NOL4LQ96MY1 436 aaPredicted RBP8.35□□□□□ -1.07
LIG3-216ENST00000593099 NSG2Q9Y328 171 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 RHBDL1O75783 438 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 SFT2D2O95562 160 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 GLIPR1P48060 266 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 LCN2P80188 198 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 GGNBP1Q5YKI7 109 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 HSD17B11Q8NBQ5 300 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 YAE1D1Q9NRH1 226 aa8.35□□□□□ -1.07
LIG3-216ENST00000593099 AP4M1O00189 453 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 CLN5O75503 358 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 OR2F2O95006 317 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 PLAURQ03405 335 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 MBNL2Q5VZF2 373 aaKnown RBP8.34□□□□□ -1.07
LIG3-216ENST00000593099 THNSL2Q86YJ6 484 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 ZNF680Q8NEM1 530 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 NUP37Q8NFH4 326 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 TP53RKQ96S44 253 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 CLEC7AQ9BXN2 247 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 MIXL1Q9H2W2 232 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 HEATR1Q9H583 2144 aaKnown RBP8.34□□□□□ -1.07
LIG3-216ENST00000593099 DOCK7Q96N67 2140 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 IGHV1-46P01743 117 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 COX5AP20674 150 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 OXA1LQ15070 435 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 UQCC3Q6UW78 93 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 TBC1D26Q86UD7 250 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 ABHD12Q8N2K0 398 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 FAM216BQ8N7L0 139 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 WDR31Q8NA23 367 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 RNF141Q8WVD5 230 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 TMUB1Q9BVT8 246 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 PLEKHA2Q9HB19 425 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 SOX15O60248 233 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 TNFSF13O75888 250 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 PRB1P04280 392 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 OR5AC1P0C628 307 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 HIST3H3Q16695 136 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 NCR3LG1Q68D85 454 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 SLC35E4Q6ICL7 350 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 CALHM1Q8IU99 346 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 SIGLECL1Q8N7X8 197 aa8.34□□□□□ -1.07
LIG3-216ENST00000593099 OR1L1Q8NH94 360 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms