RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 UBE2NLQ5JXB2 153 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 SDHAF4Q5VUM1 108 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 ZNF705AQ6ZN79 300 aaPredicted RBP3.71□□□□□ -1.82
SS18-223ENST00000583595 TCF24Q7RTU0 167 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 SLC35E3Q7Z769 313 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 H1FOOQ8IZA3 346 aaPredicted RBP3.71□□□□□ -1.82
SS18-223ENST00000583595 SLC35G3Q8N808 338 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 PLPP5Q8NEB5 264 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 OR5D16Q8NGK9 328 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 STAG3L4Q8TBR4 150 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 CD200R1Q8TD46 325 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 TMEM234Q8WY98 164 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 TMEM54Q969K7 222 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 PIK3IP1Q96FE7 263 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 TMEM56Q96MV1 263 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 ZFP3Q96NJ6 502 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 DUX3Q96PT4 197 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 TP53RKQ96S44 253 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 ATOH8Q96SQ7 321 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 HIST1H4GQ99525 98 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 C20orf144Q9BQM9 153 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 MIEN1Q9BRT3 115 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 ANGPTL4Q9BY76 406 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 SRMSQ9H3Y6 488 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 SMDT1Q9H4I9 107 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 RERGLQ9H628 205 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 SLC2A9Q9NRM0 540 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 CLEC5AQ9NY25 188 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 DNAJC27Q9NZQ0 273 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 SMPXQ9UHP9 88 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 TRMT112Q9UI30 125 aaKnown RBP3.71□□□□□ -1.82
SS18-223ENST00000583595 MRM2Q9UI43 246 aaKnown RBP3.71□□□□□ -1.82
SS18-223ENST00000583595 RBM7Q9Y580 266 aaKnown RBP3.71□□□□□ -1.82
SS18-223ENST00000583595 TMEM56-RWDD3S4R434 201 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 V9GYY9 64 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 GBF1Q92538 1859 aa3.71□□□□□ -1.82
SS18-223ENST00000583595 TRAV30A0A087WSZ9 112 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 IGKV6D-41A0A0C4DH26 115 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 A0A1B0GTI1 187 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 MGAT4DA6NG13 374 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 H3BN98 237 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 CDIPTO14735 213 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 LINC01565O15544 149 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 PHF1O43189 567 aaPredicted RBP3.7□□□□□ -1.82
SS18-223ENST00000583595 MFSD11O43934 449 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 VAMP5O95183 116 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 HPRT1P00492 218 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 CST4P01036 141 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 ARG1P05089 322 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 TRGC1P0CF51 173 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 GPX2P18283 190 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 NTSP30990 170 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 AKR1C3P42330 323 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 GABRA4P48169 554 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 APOC4P55056 127 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 TMEM33P57088 247 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 RPS23P62266 143 aaKnown RBP3.7□□□□□ -1.82
SS18-223ENST00000583595 SELENOWP63302 87 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 CDK5Q00535 292 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 C5orf64Q2M2E5 130 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 SMIM21Q3B7S5 101 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 KRTAP24-1Q3LI83 254 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 PDZD11Q5EBL8 140 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 LCE1EQ5T753 118 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 TNFAIP8L2Q6P589 184 aaPredicted RBP3.7□□□□□ -1.82
SS18-223ENST00000583595 SMARCD3Q6STE5 483 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 CLEC20AQ6ZU45 233 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 SLC25A26Q70HW3 274 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 CDC20BQ86Y33 519 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 LYG1Q8N1E2 194 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 SYS1Q8N2H4 156 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 Q8N377 158 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 ZADH2Q8N4Q0 377 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 CYB561A3Q8NBI2 242 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 ZNF485Q8NCK3 441 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 OR4E2Q8NGC2 313 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 OR9G1Q8NH87 305 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 ABHD3Q8WU67 409 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 GEMIN6Q8WXD5 167 aaKnown RBP3.7□□□□□ -1.82
SS18-223ENST00000583595 ASB17Q8WXJ9 295 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 RPEQ96AT9 228 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 PPCDCQ96CD2 204 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 RPUSD4Q96CM3 377 aaKnown RBP3.7□□□□□ -1.82
SS18-223ENST00000583595 SLC35E1Q96K37 410 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 IP6K3Q96PC2 410 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 TBL1YQ9BQ87 522 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 PBDC1Q9BVG4 233 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 C1orf198Q9H425 327 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 ISG20L2Q9H9L3 353 aaKnown RBP3.7□□□□□ -1.82
SS18-223ENST00000583595 LYRM2Q9NU23 88 aaPredicted RBP3.7□□□□□ -1.82
SS18-223ENST00000583595 TAS2R8Q9NYW2 309 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 NXT1Q9UKK6 140 aaKnown RBP3.7□□□□□ -1.82
SS18-223ENST00000583595 PCTPQ9UKL6 214 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 PSG11Q9UQ72 335 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 ST3GAL6Q9Y274 331 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 SBF1O95248 1867 aa3.7□□□□□ -1.82
SS18-223ENST00000583595 MTCL1Q9Y4B5 1905 aaKnown RBP3.7□□□□□ -1.82
SS18-223ENST00000583595 COL4A5P29400 1685 aa3.69□□□□□ -1.82
SS18-223ENST00000583595 COL2A1P02458 1487 aaPredicted RBP3.69□□□□□ -1.82
SS18-223ENST00000583595 IGHV3OR16-13A0A075B7E8 117 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms