RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 MS4A6AQ9H2W1 248 aa1.63□□□□□ -2.15
SMCHD1-209ENST00000583441 HES4Q9HCC6 221 aa1.63□□□□□ -2.15
SMCHD1-209ENST00000583441 NKIRAS1Q9NYS0 192 aa1.63□□□□□ -2.15
SMCHD1-209ENST00000583441 SNX12Q9UMY4 172 aa1.63□□□□□ -2.15
SMCHD1-209ENST00000583441 CCL26Q9Y258 94 aa1.63□□□□□ -2.15
SMCHD1-209ENST00000583441 NUP205Q92621 2012 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 A0A1W2PP64 1363 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 COL5A1P20908 1838 aaPredicted RBP1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 TRGV4A0A0C4DH28 118 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 A0A0J9YX75 114 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 C5orf49A4QMS7 147 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 KNCNA6PVL3 124 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 H3BPC8 53 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 MRASO14807 208 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 BIRC5O15392 142 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 MT-CO2P00403 227 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 OCM2P0CE71 109 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 GZMBP10144 247 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 CSRP1P21291 193 aaKnown RBP1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 DDTP30046 118 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 OR10J1P30954 320 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 GABRA4P48169 554 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 HOXC5Q00444 222 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 KRTAP6-3Q3LI67 103 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 SLC36A2Q495M3 483 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 HSP90B2PQ58FF3 399 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 TNFAIP8L2Q6P589 184 aaPredicted RBP1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 AMTNQ6UX39 209 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 ZNF567Q8N184 647 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 SLC37A2Q8TED4 501 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 TIPINQ9BVW5 301 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 NSRP1Q9H0G5 558 aaKnown RBP1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 USE1Q9NZ43 259 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 EMC3Q9P0I2 261 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 HDGFL3Q9Y3E1 203 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 ZNF337Q9Y3M9 751 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 EIF4G1Q04637 1599 aaKnown RBP1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 COL18A1P39060 1754 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 ZNF407Q9C0G0 2248 aa1.62□□□□□ -2.15
SMCHD1-209ENST00000583441 TMEM235A6NFC5 223 aa1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 NDUFB2O95178 105 aa1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 C8orf88P0DMB2 117 aa1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 MAGEA2P43356 314 aa1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 CDC34P49427 236 aaPredicted RBP1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 COTL1Q14019 142 aa1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 GNA13Q14344 377 aa1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 FAM229BQ4G0N7 80 aa1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 N4BP2L1Q5TBK1 243 aaPredicted RBP1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 JOSD2Q8TAC2 188 aa1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 DNAJC30Q96LL9 226 aa1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 LLPHQ9BRT6 129 aaKnown RBP1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 C15orf41Q9Y2V0 281 aa1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 PLXNB1O43157 2135 aa1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 YLPM1P49750 1951 aaKnown RBP1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 MYO5BQ9ULV0 1848 aa1.61□□□□□ -2.15
SMCHD1-209ENST00000583441 F5H768 121 aa1.6□□□□□ -2.15
SMCHD1-209ENST00000583441 PFDN6O15212 129 aa1.6□□□□□ -2.15
SMCHD1-209ENST00000583441 SLC16A4O15374 487 aa1.6□□□□□ -2.15
SMCHD1-209ENST00000583441 TRAPPC3O43617 180 aa1.6□□□□□ -2.15
SMCHD1-209ENST00000583441 SOD1P00441 154 aa1.6□□□□□ -2.15
SMCHD1-209ENST00000583441 CD36P16671 472 aa1.6□□□□□ -2.15
SMCHD1-209ENST00000583441 CRHBPP24387 322 aa1.6□□□□□ -2.15
SMCHD1-209ENST00000583441 DAPP51397 102 aa1.6□□□□□ -2.15
SMCHD1-209ENST00000583441 RPS24P62847 133 aaKnown RBP1.6□□□□□ -2.15
SMCHD1-209ENST00000583441 DERL2Q9GZP9 239 aa1.6□□□□□ -2.15
SMCHD1-209ENST00000583441 PCYT1BQ9Y5K3 369 aaPredicted RBP1.6□□□□□ -2.15
SMCHD1-209ENST00000583441 MINOS1-NBL1R4GNA1 71 aa1.6□□□□□ -2.15
SMCHD1-209ENST00000583441 C19orf71A6NCJ1 209 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 UBE2L6O14933 153 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 COCHO43405 550 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 DEXIO95424 95 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 IGHV1-69P01742 117 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 IL6P05231 212 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 IL3P08700 152 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 CXCL2P19875 107 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 CXCL3P19876 107 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 TMEM33P57088 247 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 KRTAP12-3P60328 96 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 CXCR4P61073 352 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 HLA-DRB3P79483 266 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 UAP1Q16222 522 aaPredicted RBP1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 OGFRL1Q5TC84 451 aaPredicted RBP1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 CST9Q5W186 159 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 MRPS24Q96EL2 167 aaKnown RBP1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 SLC2A9Q9NRM0 540 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 POLR1DQ9Y2S0 133 aa1.59□□□□□ -2.15
SMCHD1-209ENST00000583441 ABCC11Q96J66 1382 aa1.59□□□□□ -2.16
SMCHD1-209ENST00000583441 IGHV3-15A0A0B4J1V0 119 aa1.58□□□□□ -2.16
SMCHD1-209ENST00000583441 MUC21A0A0G2JKD1 596 aa1.58□□□□□ -2.16
SMCHD1-209ENST00000583441 MUC21A0A140T8X8 626 aa1.58□□□□□ -2.16
SMCHD1-209ENST00000583441 A0A1B0GW54 56 aa1.58□□□□□ -2.16
SMCHD1-209ENST00000583441 A0A1W2PQL4 384 aaPredicted RBP1.58□□□□□ -2.16
SMCHD1-209ENST00000583441 M0R381 172 aa1.58□□□□□ -2.16
SMCHD1-209ENST00000583441 CCL3P10147 92 aa1.58□□□□□ -2.16
SMCHD1-209ENST00000583441 CD24P25063 80 aa1.58□□□□□ -2.16
SMCHD1-209ENST00000583441 CRYBB3P26998 211 aa1.58□□□□□ -2.16
SMCHD1-209ENST00000583441 FOXF1Q12946 379 aa1.58□□□□□ -2.16
SMCHD1-209ENST00000583441 PLPPR5Q32ZL2 321 aa1.58□□□□□ -2.16
SMCHD1-209ENST00000583441 BAP18Q8IXM2 172 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms