RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 C1orf159Q96HA4 380 aa20.42■□□□□ 0.86
SHMT1-207ENST00000580002 AKR1E2Q96JD6 320 aa20.42■□□□□ 0.86
SHMT1-207ENST00000580002 ITGB1BP2Q9UKP3 347 aa20.42■□□□□ 0.86
SHMT1-207ENST00000580002 C3orf85A0A1B0GTC6 90 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 hCG_1809904A0A1W2PP81 198 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 A0A1W2PPE2 198 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 A0A1W2PR64 198 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 A0A1W2PRV1 198 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 M0R1X1 148 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 TOX4O94842 621 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 IGLV1-47P01700 117 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 ZNF16P17020 682 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-207ENST00000580002 HOXB4P17483 251 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-207ENST00000580002 PAX6P26367 422 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 REG1BP48304 166 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 RAB7AP51149 207 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 OR2B11Q5JQS5 317 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 C1orf122Q6ZSJ8 110 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 GLYATL2Q8WU03 294 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 FOXC2Q99958 501 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 CLEC7AQ9BXN2 247 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 GPN1Q9HCN4 374 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-207ENST00000580002 A8MV72 311 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-207ENST00000580002 SNRPGP15A8MWD9 76 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 B4DSR2 109 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 SSNA1O43805 119 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 CREBL2O60519 120 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-207ENST00000580002 CD300CQ08708 224 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 TMEM187Q14656 261 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 NCR3LG1Q68D85 454 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 LINC00311Q8N616 119 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 CCDC71LQ8N9Z2 235 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 LHFPL5Q8TAF8 219 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 HIF1ANQ9NWT6 349 aa20.41■□□□□ 0.86
SHMT1-207ENST00000580002 RAB29O14966 203 aa20.4■□□□□ 0.86
SHMT1-207ENST00000580002 IGHV4-31P0DP07 118 aa20.4■□□□□ 0.86
SHMT1-207ENST00000580002 CXCL3P19876 107 aa20.4■□□□□ 0.86
SHMT1-207ENST00000580002 KCTD9Q7L273 389 aa20.4■□□□□ 0.86
SHMT1-207ENST00000580002 C12orf45Q8N5I9 185 aaPredicted RBP20.4■□□□□ 0.86
SHMT1-207ENST00000580002 OR11H7Q8NGC8 314 aa20.4■□□□□ 0.86
SHMT1-207ENST00000580002 OR10X1Q8NGY0 326 aa20.4■□□□□ 0.86
SHMT1-207ENST00000580002 WDR89Q96FK6 387 aaPredicted RBP20.4■□□□□ 0.86
SHMT1-207ENST00000580002 TOR1AO14656 332 aa20.39■□□□□ 0.86
SHMT1-207ENST00000580002 IFNA2P01563 188 aa20.39■□□□□ 0.86
SHMT1-207ENST00000580002 F2RP25116 425 aa20.39■□□□□ 0.86
SHMT1-207ENST00000580002 TMEM249Q2WGJ8 235 aa20.39■□□□□ 0.86
SHMT1-207ENST00000580002 OR4P4Q8NGL7 312 aa20.39■□□□□ 0.86
SHMT1-207ENST00000580002 MITD1Q8WV92 249 aa20.39■□□□□ 0.86
SHMT1-207ENST00000580002 LHX4Q969G2 390 aa20.39■□□□□ 0.86
SHMT1-207ENST00000580002 DUS4LO95620 317 aaKnown RBP20.39■□□□□ 0.85
SHMT1-207ENST00000580002 DUTP33316 252 aaKnown RBP20.39■□□□□ 0.85
SHMT1-207ENST00000580002 RRAS2P62070 204 aaPredicted RBP20.39■□□□□ 0.85
SHMT1-207ENST00000580002 HLA-DRB5Q30154 266 aa20.39■□□□□ 0.85
SHMT1-207ENST00000580002 LHFPL4Q7Z7J7 247 aa20.39■□□□□ 0.85
SHMT1-207ENST00000580002 C8orf31Q8N9H6 132 aa20.39■□□□□ 0.85
SHMT1-207ENST00000580002 LINC01356Q8N9X3 169 aa20.39■□□□□ 0.85
SHMT1-207ENST00000580002 ST6GALNAC6Q969X2 333 aa20.39■□□□□ 0.85
SHMT1-207ENST00000580002 DMRTB1Q96MA1 342 aa20.39■□□□□ 0.85
SHMT1-207ENST00000580002 UNKLQ9H9P5 680 aaKnown RBP20.39■□□□□ 0.85
SHMT1-207ENST00000580002 IGHV3OR16-10A0A075B7F0 116 aa20.38■□□□□ 0.85
SHMT1-207ENST00000580002 SIX6O95475 246 aa20.38■□□□□ 0.85
SHMT1-207ENST00000580002 AVPP01185 164 aa20.38■□□□□ 0.85
SHMT1-207ENST00000580002 ARG1P05089 322 aa20.38■□□□□ 0.85
SHMT1-207ENST00000580002 DCAF12L2Q5VW00 463 aa20.38■□□□□ 0.85
SHMT1-207ENST00000580002 ZBTB34Q8NCN2 500 aa20.38■□□□□ 0.85
SHMT1-207ENST00000580002 OR13D1Q8NGV5 346 aa20.38■□□□□ 0.85
SHMT1-207ENST00000580002 C17orf50Q8WW18 174 aa20.38■□□□□ 0.85
SHMT1-207ENST00000580002 GALNT14Q96FL9 552 aa20.38■□□□□ 0.85
SHMT1-207ENST00000580002 MED28Q9H204 178 aa20.38■□□□□ 0.85
SHMT1-207ENST00000580002 PIPOXQ9P0Z9 390 aa20.38■□□□□ 0.85
SHMT1-207ENST00000580002 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP20.38■□□□□ 0.851e-8■■■■□ 21.6
SHMT1-207ENST00000580002 CREBBPQ92793 2442 aa20.38■□□□□ 0.85
SHMT1-207ENST00000580002 BAHCC1Q9P281 2608 aa20.37■□□□□ 0.85
SHMT1-207ENST00000580002 CCSO14618 274 aa20.37■□□□□ 0.85
SHMT1-207ENST00000580002 SMAD7O15105 426 aaKnown RBP20.37■□□□□ 0.85
SHMT1-207ENST00000580002 RAMP3O60896 148 aa20.37■□□□□ 0.85
SHMT1-207ENST00000580002 ZNF585BQ52M93 769 aa20.37■□□□□ 0.85
SHMT1-207ENST00000580002 OR11H6Q8NGC7 330 aa20.37■□□□□ 0.85
SHMT1-207ENST00000580002 TCTEX1D2Q8WW35 142 aa20.37■□□□□ 0.85
SHMT1-207ENST00000580002 TMEM186Q96B77 213 aa20.37■□□□□ 0.85
SHMT1-207ENST00000580002 HEXA-AS1Q9H8Q6 139 aa20.37■□□□□ 0.85
SHMT1-207ENST00000580002 GAB2Q9UQC2 676 aa20.37■□□□□ 0.85
SHMT1-207ENST00000580002 MYO9AB2RTY4 2548 aa20.37■□□□□ 0.85
SHMT1-207ENST00000580002 BUB1B-PAK6H3BSN5 160 aa20.36■□□□□ 0.85
SHMT1-207ENST00000580002 ADAP1O75689 374 aa20.36■□□□□ 0.85
SHMT1-207ENST00000580002 TGFAP01135 160 aa20.36■□□□□ 0.85
SHMT1-207ENST00000580002 CT45A6P0DMU7 189 aa20.36■□□□□ 0.85
SHMT1-207ENST00000580002 CT45A5P0DMU8 189 aa20.36■□□□□ 0.85
SHMT1-207ENST00000580002 CT45A7P0DMV0 189 aa20.36■□□□□ 0.85
SHMT1-207ENST00000580002 ZNF833PQ6ZTB9 187 aa20.36■□□□□ 0.85
SHMT1-207ENST00000580002 ZNF383Q8NA42 475 aa20.36■□□□□ 0.85
SHMT1-207ENST00000580002 MRPL20Q9BYC9 149 aaKnown RBP20.36■□□□□ 0.85
SHMT1-207ENST00000580002 KCNIP3Q9Y2W7 256 aa20.36■□□□□ 0.85
SHMT1-207ENST00000580002 HMX3A6NHT5 357 aa20.36■□□□□ 0.85
SHMT1-207ENST00000580002 SLC22A5O76082 557 aa20.36■□□□□ 0.85
SHMT1-207ENST00000580002 PRRX1P54821 245 aa20.36■□□□□ 0.85
SHMT1-207ENST00000580002 ODF3BA8MYP8 253 aa20.35■□□□□ 0.85
SHMT1-207ENST00000580002 IGKV1-39P01597 117 aa20.35■□□□□ 0.85
SHMT1-207ENST00000580002 IGKV1D-39P04432 117 aa20.35■□□□□ 0.85
SHMT1-207ENST00000580002 MSMO1Q15800 293 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms