RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 NPBQ8NG41 125 aa18.79■□□□□ 0.6
SHMT1-206ENST00000579558 TOLLIPQ9H0E2 274 aa18.79■□□□□ 0.6
SHMT1-206ENST00000579558 ZFP57Q9NU63 452 aa18.79■□□□□ 0.6
SHMT1-206ENST00000579558 WASHC3Q9Y3C0 194 aa18.79■□□□□ 0.6
SHMT1-206ENST00000579558 TRBV6-7A0A0A0MS04 114 aa18.78■□□□□ 0.6
SHMT1-206ENST00000579558 NDUFA3O95167 84 aa18.78■□□□□ 0.6
SHMT1-206ENST00000579558 DIRAS3O95661 229 aa18.78■□□□□ 0.6
SHMT1-206ENST00000579558 VDAC1P21796 283 aa18.78■□□□□ 0.6
SHMT1-206ENST00000579558 SRSF7Q16629 238 aaKnown RBP eCLIP18.78■□□□□ 0.6
SHMT1-206ENST00000579558 TIMM50Q3ZCQ8 353 aa18.78■□□□□ 0.6
SHMT1-206ENST00000579558 OXLD1Q5BKU9 147 aa18.78■□□□□ 0.6
SHMT1-206ENST00000579558 IDNKQ5T6J7 187 aa18.78■□□□□ 0.6
SHMT1-206ENST00000579558 DRAXINQ8NBI3 349 aaPredicted RBP18.78■□□□□ 0.6
SHMT1-206ENST00000579558 OR5AN1Q8NGI8 311 aa18.78■□□□□ 0.6
SHMT1-206ENST00000579558 RHBDL2Q9NX52 303 aa18.78■□□□□ 0.6
SHMT1-206ENST00000579558 TGP01266 2768 aa18.77■□□□□ 0.6
SHMT1-206ENST00000579558 NUDT19A8MXV4 375 aa18.77■□□□□ 0.6
SHMT1-206ENST00000579558 PROP1O75360 226 aa18.77■□□□□ 0.6
SHMT1-206ENST00000579558 HLA-DRB1P01911 266 aa18.77■□□□□ 0.6
SHMT1-206ENST00000579558 IGF1P05019 195 aa18.77■□□□□ 0.6
SHMT1-206ENST00000579558 GSTP1P09211 210 aaKnown RBP18.77■□□□□ 0.6
SHMT1-206ENST00000579558 DTYMKP23919 212 aa18.77■□□□□ 0.6
SHMT1-206ENST00000579558 HACD4Q5VWC8 232 aa18.77■□□□□ 0.6
SHMT1-206ENST00000579558 Q6ZS49 121 aa18.77■□□□□ 0.6
SHMT1-206ENST00000579558 GINS4Q9BRT9 223 aa18.77■□□□□ 0.6
SHMT1-206ENST00000579558 M0R1X1 148 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 RBBP9O75884 186 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 TFAP2AP05549 437 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 OR8U9P0C7N5 309 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 SCAND1P57086 179 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 CXorf66Q5JRM2 361 aaPredicted RBP18.76■□□□□ 0.59
SHMT1-206ENST00000579558 LIN54Q6MZP7 749 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 C18orf65Q6ZTR6 163 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 ZNF436-AS1Q8NC38 126 aaPredicted RBP18.76■□□□□ 0.59
SHMT1-206ENST00000579558 KLHL30-AS1Q8NEE0 82 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 WFDC9Q8NEX5 89 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 OR5H6Q8NGV6 325 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 OR8U1Q8NH10 309 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 OR2D2Q9H210 308 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 OR51J1Q9H342 316 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 ZNF580Q9UK33 172 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 ETV7Q9Y603 341 aa18.76■□□□□ 0.59
SHMT1-206ENST00000579558 IGKV1D-8A0A087WSZ0 117 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 IGHV7-81A0A0B4J1V7 117 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 TMEM235A6NFC5 223 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 RRHO14718 337 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 OR5H8P0DN80 308 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 CFHR3Q02985 330 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 FOXE3Q13461 319 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 KPRPQ5T749 579 aaPredicted RBP18.75■□□□□ 0.59
SHMT1-206ENST00000579558 C8orf86Q6ZUL3 223 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 ZNF383Q8NA42 475 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 NUDCD2Q8WVJ2 157 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 ST6GALNAC5Q9BVH7 336 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 FBXL15Q9H469 300 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 PARP11Q9NR21 331 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 RBM7Q9Y580 266 aaKnown RBP18.75■□□□□ 0.59
SHMT1-206ENST00000579558 NOTCH3Q9UM47 2321 aa18.75■□□□□ 0.59
SHMT1-206ENST00000579558 ATP6V0E1O15342 81 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 AIREO43918 545 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 APOA2P02652 100 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 RPLP1P05386 114 aaKnown RBP18.74■□□□□ 0.59
SHMT1-206ENST00000579558 ELANEP08246 267 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 SLC6A1P30531 599 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 LINC00205P59089 165 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 GNG2P59768 71 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 PITPNAQ00169 270 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 PLGLAQ15195 96 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 ZNF260Q3ZCT1 412 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 LCNL1Q6ZST4 164 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 SLC25A38Q96DW6 304 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 YIPF6Q96EC8 236 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 RNF5Q99942 180 aa18.74■□□□□ 0.59
SHMT1-206ENST00000579558 IGHG4P01861 327 aa18.73■□□□□ 0.59
SHMT1-206ENST00000579558 IGLL1P15814 213 aa18.73■□□□□ 0.59
SHMT1-206ENST00000579558 TGFBR1P36897 503 aa18.73■□□□□ 0.59
SHMT1-206ENST00000579558 ETV3LQ6ZN32 361 aa18.73■□□□□ 0.59
SHMT1-206ENST00000579558 PDPNQ86YL7 162 aa18.73■□□□□ 0.59
SHMT1-206ENST00000579558 ZNF695Q8IW36 515 aa18.73■□□□□ 0.59
SHMT1-206ENST00000579558 DCSTAMPQ9H295 470 aa18.73■□□□□ 0.59
SHMT1-206ENST00000579558 SDHAF2Q9NX18 166 aa18.73■□□□□ 0.59
SHMT1-206ENST00000579558 GAB2Q9UQC2 676 aa18.73■□□□□ 0.59
SHMT1-206ENST00000579558 WSB1Q9Y6I7 421 aa18.73■□□□□ 0.59
SHMT1-206ENST00000579558 THBS3P49746 956 aa18.72■□□□□ 0.59
SHMT1-206ENST00000579558 H1FOOQ8IZA3 346 aaPredicted RBP18.72■□□□□ 0.59
SHMT1-206ENST00000579558 RNF152Q8N8N0 203 aa18.72■□□□□ 0.59
SHMT1-206ENST00000579558 SLC35D1Q9NTN3 355 aa18.72■□□□□ 0.59
SHMT1-206ENST00000579558 PRKDCP78527 4128 aaKnown RBP18.72■□□□□ 0.59
SHMT1-206ENST00000579558 G3V318 75 aa18.71■□□□□ 0.59
SHMT1-206ENST00000579558 IGKV1-16P04430 117 aa18.71■□□□□ 0.59
SHMT1-206ENST00000579558 RPS16P62249 146 aaKnown RBP18.71■□□□□ 0.59
SHMT1-206ENST00000579558 LSM3P62310 102 aaKnown RBP18.71■□□□□ 0.59
SHMT1-206ENST00000579558 LINC00482Q8N8I6 264 aa18.71■□□□□ 0.59
SHMT1-206ENST00000579558 TSNAXQ99598 290 aaKnown RBP18.71■□□□□ 0.59
SHMT1-206ENST00000579558 METTL1Q9UBP6 276 aaKnown RBP18.71■□□□□ 0.59
SHMT1-206ENST00000579558 TRAV18A0A075B6X5 111 aa18.7■□□□□ 0.58
SHMT1-206ENST00000579558 TRAV41A0A0B4J266 112 aa18.7■□□□□ 0.58
SHMT1-206ENST00000579558 SSX5O60225 188 aa18.7■□□□□ 0.58
SHMT1-206ENST00000579558 TMEM127O75204 238 aa18.7■□□□□ 0.58
SHMT1-206ENST00000579558 PSMB8P28062 276 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms