RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 HBE1P02100 147 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 OR8U8P0C7N1 319 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 P0C879 139 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 HBG1P69891 147 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 HBG2P69892 147 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 PAX5Q02548 391 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 MZT1Q08AG7 82 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 IGFL3Q6UXB1 125 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 ZNF808Q8N4W9 903 aaPredicted RBP8.43□□□□□ -1.06
VPS53-220ENST00000576149 OR13A1Q8NGR1 328 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 SCGB1C1Q8TD33 95 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 HIST1H2BAQ96A08 127 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 ABHD17AQ96GS6 310 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 UNKLQ9H9P5 680 aaKnown RBP8.43□□□□□ -1.06
VPS53-220ENST00000576149 SPENQ96T58 3664 aaKnown RBP8.43□□□□□ -1.06
VPS53-220ENST00000576149 PPIHO43447 177 aaKnown RBP8.43□□□□□ -1.06
VPS53-220ENST00000576149 SRP19P09132 144 aaKnown RBP8.43□□□□□ -1.06
VPS53-220ENST00000576149 DAOP14920 347 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 BRWD1-AS2P59051 145 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 RAB2AP61019 212 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 TNFRSF9Q07011 255 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 CATR1Q13166 79 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 ICAM4Q14773 271 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 HAGHQ16775 308 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 LRRC75BQ2VPJ9 315 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 ZNF506Q5JVG8 444 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 SPANXN5Q5MJ07 72 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 CD177Q8N6Q3 437 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 TPRX1Q8N7U7 411 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 LRRC29Q8WV35 223 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 PSMG3Q9BT73 122 aaPredicted RBP8.43□□□□□ -1.06
VPS53-220ENST00000576149 RSG1Q9BU20 258 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 BIN3Q9NQY0 253 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 HSPB7Q9UBY9 170 aa8.43□□□□□ -1.06
VPS53-220ENST00000576149 ZFHX4Q86UP3 3567 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 ASPMQ8IZT6 3477 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 SERTM2A0A1B0GWG4 89 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 XKRY2A2RUG3 117 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 KRASP01116 189 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 MT-ND4LP03901 98 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 HSPB1P04792 205 aaKnown RBP8.42□□□□□ -1.06
VPS53-220ENST00000576149 SSTR5P35346 364 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 G6PCP35575 357 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 EIF2S3P41091 472 aaKnown RBP8.42□□□□□ -1.06
VPS53-220ENST00000576149 ZNF816Q0VGE8 651 aaPredicted RBP8.42□□□□□ -1.06
VPS53-220ENST00000576149 MSMPQ1L6U9 139 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 RNF212Q495C1 297 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 TMEM14EPQ6UXP3 125 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 LINC00518Q8N0U6 118 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 TCTEX1D1Q8N7M0 179 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 OR2Z1Q8NG97 314 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 CLDND2Q8NHS1 167 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 PARD6GQ9BYG4 376 aaPredicted RBP8.42□□□□□ -1.06
VPS53-220ENST00000576149 RBKSQ9H477 322 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 RPRMQ9NS64 109 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 GTF3C1Q12789 2109 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 C17orf98A8MV24 154 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 C15orf65H3BRN8 121 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 PRDX2P32119 198 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 OR2B11Q5JQS5 317 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 TRAT1Q6PIZ9 186 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 ISOC2Q96AB3 205 aa8.42□□□□□ -1.06
VPS53-220ENST00000576149 PUS1Q9Y606 427 aaKnown RBP eCLIP8.42□□□□□ -1.06
VPS53-220ENST00000576149 KIAA2026Q5HYC2 2103 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 ODAMA1E959 279 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 LRRC30A6NM36 301 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 SRRM5B3KS81 715 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 ZNF737O75373 536 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 S1PR2O95136 353 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 CLDN1O95832 211 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 EGR1P18146 543 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 HOXA1P49639 335 aaPredicted RBP8.41□□□□□ -1.06
VPS53-220ENST00000576149 SERF2P84101 59 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 KHDC3LQ587J8 217 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 TIMM23BQ5SRD1 257 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 BTNL3Q6UXE8 466 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 ZNF66Q6ZN08 573 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 LRP11Q86VZ4 500 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 ZFP82Q8N141 532 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 RFESDQ8TAC1 157 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 C2CD4CQ8TF44 421 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 TCTEX1D2Q8WW35 142 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 OR4C12Q96R67 309 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 AGMATQ9BSE5 352 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 MRPL37Q9BZE1 423 aaKnown RBP8.41□□□□□ -1.06
VPS53-220ENST00000576149 WDR61Q9GZS3 305 aaKnown RBP8.41□□□□□ -1.06
VPS53-220ENST00000576149 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.41□□□□□ -1.06
VPS53-220ENST00000576149 DUSP13Q9UII6 198 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 PTPRBP23467 1997 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 IGHV3-43A0A0B4J1X8 118 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 SPINT2O43291 252 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 CLDN14O95500 239 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 ADH4P08319 380 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 IGHV3-43DP0DP04 118 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 PTAFRP25105 342 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 CFHR2P36980 270 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 ZNF83P51522 516 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 RAB5BP61020 215 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 ZNF474Q6S9Z5 364 aaPredicted RBP8.41□□□□□ -1.06
VPS53-220ENST00000576149 Q6ZS92 163 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms