RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 ZNF645Q8N7E2 425 aa14.63□□□□□ -0.07
CCDC40-213ENST00000574933 ZDHHC22Q8N966 263 aa14.63□□□□□ -0.07
CCDC40-213ENST00000574933 ZNF2Q9BSG1 426 aaPredicted RBP14.63□□□□□ -0.07
CCDC40-213ENST00000574933 ESM1Q9NQ30 184 aa14.63□□□□□ -0.07
CCDC40-213ENST00000574933 SDHAF2Q9NX18 166 aa14.63□□□□□ -0.07
CCDC40-213ENST00000574933 RBM7Q9Y580 266 aaKnown RBP14.63□□□□□ -0.07
CCDC40-213ENST00000574933 TCF21O43680 179 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 IGLV2-14P01704 120 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 PPP5CP53041 499 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 AP3S2P59780 193 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 TSPAN5P62079 268 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 BAMBIQ13145 260 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 PLA1AQ53H76 456 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 RPL39P5Q59GN2 51 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 TMEM17Q86X19 198 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 OR4D10Q8NGI6 311 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 OR4C16Q8NGL9 310 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 C5orf30Q96GV9 206 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 NABP2Q9BQ15 211 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 CCDC32Q9BV29 185 aa14.62□□□□□ -0.07
CCDC40-213ENST00000574933 WDR12Q9GZL7 423 aaKnown RBP14.62□□□□□ -0.07
CCDC40-213ENST00000574933 DNAJC9-AS1A6NH13 148 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 TIMM23O14925 209 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 HOXA3O43365 443 aaPredicted RBP14.61□□□□□ -0.07
CCDC40-213ENST00000574933 IGHV4-59P01825 116 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 IFNA6P05013 189 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 CD1BP29016 333 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 REG1BP48304 166 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 UCP3P55916 312 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 HERV-K104P61576 105 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 EBI3Q14213 229 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 ZNF846Q147U1 533 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 SLC9A3R2Q15599 337 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 TOMM5Q8N4H5 51 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 ZBTB34Q8NCN2 500 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 MRPL20Q9BYC9 149 aaKnown RBP14.61□□□□□ -0.07
CCDC40-213ENST00000574933 ABCB10Q9NRK6 738 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 SLC2A8Q9NY64 477 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 ATRQ13535 2644 aa14.61□□□□□ -0.07
CCDC40-213ENST00000574933 H3BUX3 64 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 VENTXO95231 258 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 CT45A6P0DMU7 189 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 CT45A5P0DMU8 189 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 CT45A7P0DMV0 189 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 IL7P13232 177 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 LSAMPQ13449 338 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 EIF4EBP1Q13541 118 aaPredicted RBP14.6□□□□□ -0.07
CCDC40-213ENST00000574933 AADACL3Q5VUY0 350 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 DRAM1Q8N682 238 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 OR5AN1Q8NGI8 311 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 BORCS5Q969J3 196 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 AKR1E2Q96JD6 320 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 SLC5A7Q9GZV3 580 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 FXYD6Q9H0Q3 95 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 TCF19Q9Y242 345 aa14.6□□□□□ -0.07
CCDC40-213ENST00000574933 BTBD17A6NE02 478 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 OR5H14A6NHG9 310 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 DISC1C4P0D8 188 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 AMY2AP04746 511 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 FAUP35544 74 aaKnown RBP14.59□□□□□ -0.07
CCDC40-213ENST00000574933 RAB13P51153 203 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 FXYD4P59646 89 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 TRIQKQ629K1 86 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 LPCAT3Q6P1A2 487 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 LIAT1Q6ZQX7 453 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 MOB3BQ86TA1 216 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 OR56B4Q8NH76 319 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 TERB2Q8NHR7 220 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 SECTM1Q8WVN6 248 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 ADTRPQ96IZ2 230 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 HRASLSQ9HDD0 168 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 VPREB3Q9UKI3 123 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 TNCP24821 2201 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 PLXNB1O43157 2135 aa14.59□□□□□ -0.07
CCDC40-213ENST00000574933 CUBNO60494 3623 aa14.58□□□□□ -0.08
CCDC40-213ENST00000574933 A6NDX4 124 aa14.58□□□□□ -0.08
CCDC40-213ENST00000574933 J3QRK9 145 aa14.58□□□□□ -0.08
CCDC40-213ENST00000574933 M0R1X1 148 aa14.58□□□□□ -0.08
CCDC40-213ENST00000574933 RNASE1P07998 156 aaKnown RBP14.58□□□□□ -0.08
CCDC40-213ENST00000574933 GNRHRP30968 328 aa14.58□□□□□ -0.08
CCDC40-213ENST00000574933 DUTP33316 252 aaKnown RBP14.58□□□□□ -0.08
CCDC40-213ENST00000574933 UBA52P62987 128 aaKnown RBP14.58□□□□□ -0.08
CCDC40-213ENST00000574933 BVESQ8NE79 360 aa14.58□□□□□ -0.08
CCDC40-213ENST00000574933 PRRT1Q99946 306 aa14.58□□□□□ -0.08
CCDC40-213ENST00000574933 CCL28Q9NRJ3 127 aa14.58□□□□□ -0.08
CCDC40-213ENST00000574933 PITPNC1Q9UKF7 332 aa14.58□□□□□ -0.08
CCDC40-213ENST00000574933 H0YJW9 148 aa14.57□□□□□ -0.08
CCDC40-213ENST00000574933 SNRNP70P08621 437 aaKnown RBP14.57□□□□□ -0.08
CCDC40-213ENST00000574933 FAM106CPP0CH98 169 aa14.57□□□□□ -0.08
CCDC40-213ENST00000574933 MC5RP33032 325 aa14.57□□□□□ -0.08
CCDC40-213ENST00000574933 ECI1P42126 302 aa14.57□□□□□ -0.08
CCDC40-213ENST00000574933 THBS3P49746 956 aa14.57□□□□□ -0.08
CCDC40-213ENST00000574933 RPL15P61313 204 aaKnown RBP14.57□□□□□ -0.08
CCDC40-213ENST00000574933 TAGLNQ01995 201 aaKnown RBP14.57□□□□□ -0.08
CCDC40-213ENST00000574933 FAAP20Q6NZ36 180 aa14.57□□□□□ -0.08
CCDC40-213ENST00000574933 CCBE1Q6UXH8 406 aaPredicted RBP14.57□□□□□ -0.08
CCDC40-213ENST00000574933 ZNF66Q6ZN08 573 aa14.57□□□□□ -0.08
CCDC40-213ENST00000574933 ZNF818PQ6ZRF7 136 aa14.57□□□□□ -0.08
CCDC40-213ENST00000574933 PRIMA1Q86XR5 153 aa14.57□□□□□ -0.08
CCDC40-213ENST00000574933 Q8N6K4 173 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms