RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CTXN2P0C2S0 81 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 TNFSF8P32971 234 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 RFX2P48378 723 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 FOXL1Q12952 345 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 OR5AP2Q8NGF4 316 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 DGCR14Q96DF8 476 aaKnown RBP15.58■□□□□ 0.08
CLN3-225ENST00000566824 DIRAS2Q96HU8 199 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 S1PR3Q99500 378 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 C16orf95Q9H693 158 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 SCPEP1Q9HB40 452 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 SDHAF2Q9NX18 166 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 ZNF221Q9UK13 617 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 OR2W1Q9Y3N9 320 aa15.58■□□□□ 0.08
CLN3-225ENST00000566824 OR5H8P0DN80 308 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 AADACP22760 399 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 HLA-DMAP28067 261 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 FCGR2CP31995 323 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 KRTAP10-3P60369 221 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 DGCR2P98153 550 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 CDK10Q15131 360 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 FAM71F2Q6NXP2 309 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 FAM131AQ6UXB0 335 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 ZNF383Q8NA42 475 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 OR4F5Q8NH21 305 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 RAB18Q9NP72 206 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 PLSCR3Q9NRY6 295 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 KLK11Q9UBX7 282 aa15.57■□□□□ 0.08
CLN3-225ENST00000566824 M0R1X1 148 aa15.56■□□□□ 0.08
CLN3-225ENST00000566824 IGLV2-14P01704 120 aa15.56■□□□□ 0.08
CLN3-225ENST00000566824 CNTFRP26992 372 aa15.56■□□□□ 0.08
CLN3-225ENST00000566824 F2RL1P55085 397 aa15.56■□□□□ 0.08
CLN3-225ENST00000566824 SRSF4Q08170 494 aaKnown RBP15.56■□□□□ 0.08
CLN3-225ENST00000566824 TMEM95Q3KNT9 176 aa15.56■□□□□ 0.08
CLN3-225ENST00000566824 OR4C13Q8NGP0 309 aa15.56■□□□□ 0.08
CLN3-225ENST00000566824 OR2T10Q8NGZ9 312 aa15.56■□□□□ 0.08
CLN3-225ENST00000566824 SOSTQ9BQB4 213 aa15.56■□□□□ 0.08
CLN3-225ENST00000566824 NPFFR1Q9GZQ6 430 aa15.56■□□□□ 0.08
CLN3-225ENST00000566824 NECAP2Q9NVZ3 263 aa15.56■□□□□ 0.08
CLN3-225ENST00000566824 MMP24Q9Y5R2 645 aa15.56■□□□□ 0.08
CLN3-225ENST00000566824 CLPSL1A2RUU4 121 aa15.55■□□□□ 0.08
CLN3-225ENST00000566824 H0YJW9 148 aa15.55■□□□□ 0.08
CLN3-225ENST00000566824 MOSP00540 346 aa15.55■□□□□ 0.08
CLN3-225ENST00000566824 ABCA11PQ4W5N1 156 aa15.55■□□□□ 0.08
CLN3-225ENST00000566824 C12orf54Q6X4T0 127 aa15.55■□□□□ 0.08
CLN3-225ENST00000566824 SPATA3Q8NHX4 192 aa15.55■□□□□ 0.08
CLN3-225ENST00000566824 GHITMQ9H3K2 345 aa15.55■□□□□ 0.08
CLN3-225ENST00000566824 BEX1Q9HBH7 125 aa15.55■□□□□ 0.08
CLN3-225ENST00000566824 EHFQ9NZC4 300 aa15.55■□□□□ 0.08
CLN3-225ENST00000566824 GAB2Q9UQC2 676 aa15.55■□□□□ 0.08
CLN3-225ENST00000566824 MOB4Q9Y3A3 225 aa15.55■□□□□ 0.08
CLN3-225ENST00000566824 RBM7Q9Y580 266 aaKnown RBP15.55■□□□□ 0.08
CLN3-225ENST00000566824 SULT1C2O00338 296 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 RCVRNP35243 200 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 HRH1P35367 487 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 LUMP51884 338 aaPredicted RBP15.54■□□□□ 0.08
CLN3-225ENST00000566824 PROK1P58294 105 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 ZNF660Q6AZW8 331 aaPredicted RBP15.54■□□□□ 0.08
CLN3-225ENST00000566824 C11orf88Q6PI97 169 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 OVCH2Q7RTZ1 564 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 C16orf82Q7Z2V1 217 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 Q8N2B8 174 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 C5orf56Q8N8D9 126 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.54■□□□□ 0.08
CLN3-225ENST00000566824 OR5AN1Q8NGI8 311 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 GPHA2Q96T91 129 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 MMP27Q9H306 513 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 RANBP3Q9H6Z4 567 aaPredicted RBP15.54■□□□□ 0.08
CLN3-225ENST00000566824 NDUFA13Q9P0J0 144 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 RNF114Q9Y508 228 aa15.54■□□□□ 0.08
CLN3-225ENST00000566824 A6NHS1 94 aa15.53■□□□□ 0.08
CLN3-225ENST00000566824 TPPPO94811 219 aa15.53■□□□□ 0.08
CLN3-225ENST00000566824 PPYP01298 95 aa15.53■□□□□ 0.08
CLN3-225ENST00000566824 DYRK1AQ13627 763 aa15.53■□□□□ 0.08
CLN3-225ENST00000566824 IL18Q14116 193 aa15.53■□□□□ 0.08
CLN3-225ENST00000566824 HIST2H2BDQ6DRA6 164 aa15.53■□□□□ 0.08
CLN3-225ENST00000566824 Q8N9W7 124 aa15.53■□□□□ 0.08
CLN3-225ENST00000566824 OR5H2Q8NGV7 314 aa15.53■□□□□ 0.08
CLN3-225ENST00000566824 PRSS22Q9GZN4 317 aa15.53■□□□□ 0.08
CLN3-225ENST00000566824 CCL28Q9NRJ3 127 aa15.53■□□□□ 0.08
CLN3-225ENST00000566824 SERTAD4Q9NUC0 356 aa15.53■□□□□ 0.08
CLN3-225ENST00000566824 MTFP1Q9UDX5 166 aa15.53■□□□□ 0.08
CLN3-225ENST00000566824 PLXNB1O43157 2135 aa15.53■□□□□ 0.08
CLN3-225ENST00000566824 LINC00473A8K010 186 aa15.52■□□□□ 0.08
CLN3-225ENST00000566824 M0QYG6 137 aa15.52■□□□□ 0.08
CLN3-225ENST00000566824 FXYD4P59646 89 aa15.52■□□□□ 0.08
CLN3-225ENST00000566824 ACTBP60709 375 aa15.52■□□□□ 0.08
CLN3-225ENST00000566824 PYHIN1Q6K0P9 492 aa15.52■□□□□ 0.08
CLN3-225ENST00000566824 ZNF645Q8N7E2 425 aa15.52■□□□□ 0.08
CLN3-225ENST00000566824 SECTM1Q8WVN6 248 aa15.52■□□□□ 0.08
CLN3-225ENST00000566824 GIMAP1Q8WWP7 306 aa15.52■□□□□ 0.08
CLN3-225ENST00000566824 FCAMRQ8WWV6 532 aa15.52■□□□□ 0.08
CLN3-225ENST00000566824 A3GALT2U3KPV4 340 aa15.52■□□□□ 0.08
CLN3-225ENST00000566824 LINC01548A6NM66 108 aa15.51■□□□□ 0.07
CLN3-225ENST00000566824 NCBP2LA6PVI3 153 aaKnown RBP15.51■□□□□ 0.07
CLN3-225ENST00000566824 GABARAPH6UMI1 98 aa15.51■□□□□ 0.07
CLN3-225ENST00000566824 HAX1O00165 279 aa15.51■□□□□ 0.07
CLN3-225ENST00000566824 IGKV1-16P04430 117 aa15.51■□□□□ 0.07
CLN3-225ENST00000566824 DUTP33316 252 aaKnown RBP15.51■□□□□ 0.07
CLN3-225ENST00000566824 TAS2R46P59540 309 aa15.51■□□□□ 0.07
CLN3-225ENST00000566824 RPL30P62888 115 aaKnown RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms