RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 NUBP2Q9Y5Y2 271 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 SMAD5-AS1Q9Y6J3 95 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 CPEP16870 476 aa11.57□□□□□ -0.56
CLN3-222ENST00000566083 ACTBL2Q562R1 376 aa11.57□□□□□ -0.56
CLN3-222ENST00000566083 RPL39P5Q59GN2 51 aa11.57□□□□□ -0.56
CLN3-222ENST00000566083 C19orf54Q5BKX5 351 aa11.57□□□□□ -0.56
CLN3-222ENST00000566083 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.57□□□□□ -0.56
CLN3-222ENST00000566083 ABHD5Q8WTS1 349 aa11.57□□□□□ -0.56
CLN3-222ENST00000566083 ABHD14BQ96IU4 210 aa11.57□□□□□ -0.56
CLN3-222ENST00000566083 TOLLIPQ9H0E2 274 aa11.57□□□□□ -0.56
CLN3-222ENST00000566083 C11orf54Q9H0W9 315 aaPredicted RBP11.57□□□□□ -0.56
CLN3-222ENST00000566083 Q9N2K0 584 aa11.57□□□□□ -0.56
CLN3-222ENST00000566083 ACOT13Q9NPJ3 140 aa11.57□□□□□ -0.56
CLN3-222ENST00000566083 AK3Q9UIJ7 227 aa11.57□□□□□ -0.56
CLN3-222ENST00000566083 STAB2Q8WWQ8 2551 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 SOCS1O15524 211 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 RGS10O43665 173 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 LY86O95711 162 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 APOA2P02652 100 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 TFAP2AP05549 437 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 LGALS1P09382 135 aaKnown RBP11.56□□□□□ -0.56
CLN3-222ENST00000566083 HSMCR30P0CW71 290 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 GNB1P62873 340 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 MLLT11Q13015 90 aaPredicted RBP11.56□□□□□ -0.56
CLN3-222ENST00000566083 C5orf24Q7Z6I8 188 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 PPP1R27Q86WC6 154 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 PDPNQ86YL7 162 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 DCUN1D4Q92564 292 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 TMEM203Q969S6 136 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 OR5B12Q96R08 314 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 CMSS1Q9BQ75 279 aaKnown RBP11.56□□□□□ -0.56
CLN3-222ENST00000566083 DUSP21Q9H596 190 aa11.56□□□□□ -0.56
CLN3-222ENST00000566083 METTL1Q9UBP6 276 aaKnown RBP11.56□□□□□ -0.56
CLN3-222ENST00000566083 TRDCB7Z8K6 153 aa11.55□□□□□ -0.56
CLN3-222ENST00000566083 SAP30O75446 220 aa11.55□□□□□ -0.56
CLN3-222ENST00000566083 DIRAS3O95661 229 aa11.55□□□□□ -0.56
CLN3-222ENST00000566083 OR8U9P0C7N5 309 aa11.55□□□□□ -0.56
CLN3-222ENST00000566083 TAGLNQ01995 201 aaKnown RBP11.55□□□□□ -0.56
CLN3-222ENST00000566083 P2RY14Q15391 338 aa11.55□□□□□ -0.56
CLN3-222ENST00000566083 ASPHD1Q5U4P2 390 aa11.55□□□□□ -0.56
CLN3-222ENST00000566083 UNQ5815/PRO19632Q6UWF5 114 aa11.55□□□□□ -0.56
CLN3-222ENST00000566083 OR6Q1Q8NGQ2 317 aa11.55□□□□□ -0.56
CLN3-222ENST00000566083 FAM3DQ96BQ1 224 aa11.55□□□□□ -0.56
CLN3-222ENST00000566083 RBMXL1Q96E39 390 aaKnown RBP11.55□□□□□ -0.56
CLN3-222ENST00000566083 TMEM68Q96MH6 324 aa11.55□□□□□ -0.56
CLN3-222ENST00000566083 V9GY05 133 aa11.55□□□□□ -0.56
CLN3-222ENST00000566083 DNAH9Q9NYC9 4486 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 A0A0A6YYD4 124 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 FOXI3A8MTJ6 420 aaPredicted RBP11.54□□□□□ -0.56
CLN3-222ENST00000566083 H3BUA1 57 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 HSPB1P04792 205 aaKnown RBP11.54□□□□□ -0.56
CLN3-222ENST00000566083 LGALS7P47929 136 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 VEGFCP49767 419 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 RPS16P62249 146 aaKnown RBP11.54□□□□□ -0.56
CLN3-222ENST00000566083 NDPQ00604 133 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 CBX3Q13185 183 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 PSG5Q15238 335 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 GLDNQ6ZMI3 551 aaPredicted RBP11.54□□□□□ -0.56
CLN3-222ENST00000566083 TMEM91Q6ZNR0 172 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 PRSS48Q7RTY5 328 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 OR4A4PQ8NGN8 299 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 ARHGAP5-AS1Q96IT6 56 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 VCX3BQ9H321 246 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 KCNK15Q9H427 330 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 OR1A1Q9P1Q5 309 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 RAB22AQ9UL26 194 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 GAB2Q9UQC2 676 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 AK6Q9Y3D8 172 aaKnown RBP11.54□□□□□ -0.56
CLN3-222ENST00000566083 A3GALT2U3KPV4 340 aa11.54□□□□□ -0.56
CLN3-222ENST00000566083 PDCD5O14737 125 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 DENRO43583 198 aaKnown RBP11.53□□□□□ -0.56
CLN3-222ENST00000566083 SOX15O60248 233 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 SCTP09683 121 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 CD3GP09693 182 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 GADD45AP24522 165 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 CALRP27797 417 aaKnown RBP11.53□□□□□ -0.56
CLN3-222ENST00000566083 TMEM50BP56557 158 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 PITPNAQ00169 270 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 C2orf76Q3KRA6 126 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 MOGAT2Q3SYC2 334 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 ACSM6Q6P461 480 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 LFNGQ8NES3 379 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 ARPC1AQ92747 370 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 DLX4Q92988 240 aaPredicted RBP11.53□□□□□ -0.56
CLN3-222ENST00000566083 CYYR1Q96J86 154 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 OR4C12Q96R67 309 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 MGLLQ99685 303 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 HDHD3Q9BSH5 251 aaPredicted RBP11.53□□□□□ -0.56
CLN3-222ENST00000566083 ELOVL1Q9BW60 279 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 PECRQ9BY49 303 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 CCDC90BQ9GZT6 254 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 PARP12Q9H0J9 701 aaKnown RBP11.53□□□□□ -0.56
CLN3-222ENST00000566083 RDH8Q9NYR8 311 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 FBXO7Q9Y3I1 522 aa11.53□□□□□ -0.56
CLN3-222ENST00000566083 A0A0G2JLM5 398 aa11.52□□□□□ -0.56
CLN3-222ENST00000566083 C3orf84H3BNL1 204 aa11.52□□□□□ -0.56
CLN3-222ENST00000566083 FCN1O00602 326 aa11.52□□□□□ -0.56
CLN3-222ENST00000566083 CA2P00918 260 aa11.52□□□□□ -0.56
CLN3-222ENST00000566083 EGR2P11161 476 aaPredicted RBP11.52□□□□□ -0.56
CLN3-222ENST00000566083 TPPP2P59282 170 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms