RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 GNPNAT1Q96EK6 184 aaPredicted RBP11.36□□□□□ -0.59
CLK3-215ENST00000564353 KIAA1456Q9P272 454 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 FOLR2P14207 255 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 TLE4Q04727 773 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 NECAP1Q8NC96 275 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 GATAD1Q8WUU5 269 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 C5orf30Q96GV9 206 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 OR4C12Q96R67 309 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 NIPSNAP3BQ9BS92 247 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 KALRNO60229 2985 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 CEBPZOSA8MTT3 80 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 SOX15O60248 233 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 GFI1BQ5VTD9 330 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 ZNF497Q6ZNH5 498 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 OR5T1Q8NG75 326 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 MUCL1Q96DR8 90 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 MRPL37Q9BZE1 423 aaKnown RBP11.35□□□□□ -0.59
CLK3-215ENST00000564353 GP6Q9HCN6 339 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 CLEC18AA5D8T8 446 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 C21orf140B9A014 251 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 HAND1O96004 215 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 BAXQ07812 192 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 ZNF880Q6PDB4 577 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 CLEC18CQ8NCF0 446 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 TCTEX1D2Q8WW35 142 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 SLC25A22Q9H936 323 aa11.35□□□□□ -0.59
CLK3-215ENST00000564353 A0A087X0M5 115 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 A0A1B0GU03 582 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 A0A1B0GX30 115 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 OR5H1A6NKK0 313 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 C12orf77C9JDV5 145 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 MLNRO43193 412 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 IL2RGP31785 369 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 GLIPR1P48060 266 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 FOXF2Q12947 444 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 PYY3Q5JQD4 70 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 KLF14Q8TD94 323 aaPredicted RBP11.34□□□□□ -0.59
CLK3-215ENST00000564353 RCC1LQ96I51 464 aaKnown RBP11.34□□□□□ -0.59
CLK3-215ENST00000564353 S1PR2O95136 353 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 IGKV1D-33P01593 117 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 IGKV1-33P01594 117 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 TRGC2P03986 189 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 CD200P41217 278 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 RAB4BP61018 213 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 ETFRF1Q6IPR1 90 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 HEPN1Q6WQI6 88 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 ZNF525Q8N782 197 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 NANOS1Q8WY41 292 aaKnown RBP11.34□□□□□ -0.59
CLK3-215ENST00000564353 OPA3Q9H6K4 179 aa11.34□□□□□ -0.59
CLK3-215ENST00000564353 COL27A1Q8IZC6 1860 aaPredicted RBP11.33□□□□□ -0.6
CLK3-215ENST00000564353 C17orf98A8MV24 154 aa11.33□□□□□ -0.6
CLK3-215ENST00000564353 SH2D1BO14796 132 aa11.33□□□□□ -0.6
CLK3-215ENST00000564353 ELOBQ15370 118 aa11.33□□□□□ -0.6
CLK3-215ENST00000564353 SPNS3Q6ZMD2 512 aa11.33□□□□□ -0.6
CLK3-215ENST00000564353 RBKSQ9H477 322 aa11.33□□□□□ -0.6
CLK3-215ENST00000564353 GFOD1Q9NXC2 390 aa11.33□□□□□ -0.6
CLK3-215ENST00000564353 PTBP3O95758 552 aaKnown RBP11.33□□□□□ -0.6
CLK3-215ENST00000564353 FDCSPQ8NFU4 85 aa11.33□□□□□ -0.6
CLK3-215ENST00000564353 FER1L6-AS2Q96M78 137 aa11.33□□□□□ -0.6
CLK3-215ENST00000564353 CABLES2Q9BTV7 478 aa11.33□□□□□ -0.6
CLK3-215ENST00000564353 PKIBQ9C010 78 aa11.33□□□□□ -0.6
CLK3-215ENST00000564353 TMEM9BQ9NQ34 198 aa11.33□□□□□ -0.6
CLK3-215ENST00000564353 LRP5LA4QPB2 252 aa11.32□□□□□ -0.6
CLK3-215ENST00000564353 ZG16O60844 167 aa11.32□□□□□ -0.6
CLK3-215ENST00000564353 DFFBO76075 338 aa11.32□□□□□ -0.6
CLK3-215ENST00000564353 DDTP30046 118 aa11.32□□□□□ -0.6
CLK3-215ENST00000564353 VKORC1L1Q8N0U8 176 aa11.32□□□□□ -0.6
CLK3-215ENST00000564353 TVP23CQ96ET8 276 aa11.32□□□□□ -0.6
CLK3-215ENST00000564353 RAB40CQ96S21 281 aa11.32□□□□□ -0.6
CLK3-215ENST00000564353 AURKAIP1Q9NWT8 199 aaPredicted RBP11.32□□□□□ -0.6
CLK3-215ENST00000564353 ROS1P08922 2347 aa11.32□□□□□ -0.6
CLK3-215ENST00000564353 AP4M1O00189 453 aa11.32□□□□□ -0.6
CLK3-215ENST00000564353 HBZP02008 142 aa11.32□□□□□ -0.6
CLK3-215ENST00000564353 PGA5P0DJD9 388 aa11.32□□□□□ -0.6
CLK3-215ENST00000564353 SLC38A11Q08AI6 406 aa11.32□□□□□ -0.6
CLK3-215ENST00000564353 ZNF506Q5JVG8 444 aa11.32□□□□□ -0.6
CLK3-215ENST00000564353 WDR25Q64LD2 544 aaPredicted RBP11.32□□□□□ -0.6
CLK3-215ENST00000564353 RPUSD4Q96CM3 377 aaKnown RBP11.32□□□□□ -0.6
CLK3-215ENST00000564353 LOC102723971A0A1B0GUV8 181 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.31□□□□□ -0.6
CLK3-215ENST00000564353 TIMM8AO60220 97 aaPredicted RBP11.31□□□□□ -0.6
CLK3-215ENST00000564353 IGHV2-5P01817 119 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 SNRPCP09234 159 aaKnown RBP11.31□□□□□ -0.6
CLK3-215ENST00000564353 WT1P19544 449 aaPredicted RBP11.31□□□□□ -0.6
CLK3-215ENST00000564353 TUBG1P23258 451 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 SRSF7Q16629 238 aaKnown RBP eCLIP11.31□□□□□ -0.6
CLK3-215ENST00000564353 PLA2G2CQ5R387 149 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 VHLLQ6RSH7 139 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 C2orf88Q9BSF0 95 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 TOLLIPQ9H0E2 274 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 METTL1Q9UBP6 276 aaKnown RBP11.31□□□□□ -0.6
CLK3-215ENST00000564353 DUSP13Q9UII6 198 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 PSG11Q9UQ72 335 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 POLDIP2Q9Y2S7 368 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 TNRC6AQ8NDV7 1962 aaKnown RBP11.31□□□□□ -0.6
CLK3-215ENST00000564353 IGHV3OR15-7A0A075B7D8 119 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 DUXBA0A1W2PPF3 345 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 IFNA17P01571 189 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 ERVK11-1P61568 191 aa11.31□□□□□ -0.6
CLK3-215ENST00000564353 TFF3Q07654 80 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms