RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 C19orf54Q5BKX5 351 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 FAM71F2Q6NXP2 309 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 SBSPONQ8IVN8 264 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 ARHGAP5-AS1Q96IT6 56 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 UBE2E2Q96LR5 201 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 CLCC1Q96S66 551 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 CCDC90BQ9GZT6 254 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 C11orf54Q9H0W9 315 aaPredicted RBP14.71□□□□□ -0.05
VPS35-202ENST00000561713 ISYNA1Q9NPH2 558 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 TPSG1Q9NRR2 321 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 OR5H14A6NHG9 310 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 RAB29O14966 203 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 HSPA12AO43301 675 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 RGS10O43665 173 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 OR8U8P0C7N1 319 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 CALRP27797 417 aaKnown RBP14.7□□□□□ -0.06
VPS35-202ENST00000561713 RAB9AP51151 201 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 CX3CL1P78423 397 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 MINDY2Q8NBR6 621 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 DCUN1D4Q92564 292 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 RCHY1Q96PM5 261 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 AGMATQ9BSE5 352 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 URM1Q9BTM9 101 aaKnown RBP14.7□□□□□ -0.06
VPS35-202ENST00000561713 C12orf4Q9NQ89 552 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 WASHC3Q9Y3C0 194 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 LRRC42Q9Y546 428 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 SMAD5-AS1Q9Y6J3 95 aa14.7□□□□□ -0.06
VPS35-202ENST00000561713 TRBV6-6A0A0A6YYG2 114 aa14.69□□□□□ -0.06
VPS35-202ENST00000561713 IGKV1-6A0A0C4DH72 117 aa14.69□□□□□ -0.06
VPS35-202ENST00000561713 IGHV3-11P01762 117 aa14.69□□□□□ -0.06
VPS35-202ENST00000561713 GSTP1P09211 210 aaKnown RBP14.69□□□□□ -0.06
VPS35-202ENST00000561713 CD37P11049 281 aa14.69□□□□□ -0.06
VPS35-202ENST00000561713 CEACAM6P40199 344 aa14.69□□□□□ -0.06
VPS35-202ENST00000561713 FABP5Q01469 135 aa14.69□□□□□ -0.06
VPS35-202ENST00000561713 PLAC9Q5JTB6 97 aa14.69□□□□□ -0.06
VPS35-202ENST00000561713 HES5Q5TA89 166 aa14.69□□□□□ -0.06
VPS35-202ENST00000561713 PECRQ9BY49 303 aa14.69□□□□□ -0.06
VPS35-202ENST00000561713 Q9N2K0 584 aa14.69□□□□□ -0.06
VPS35-202ENST00000561713 FOXA2Q9Y261 457 aaPredicted RBP14.69□□□□□ -0.06
VPS35-202ENST00000561713 TPRKBQ9Y3C4 175 aa14.69□□□□□ -0.06
VPS35-202ENST00000561713 IGHV4OR15-8A0A075B7B6 117 aa14.68□□□□□ -0.06
VPS35-202ENST00000561713 A0A087WW49 117 aa14.68□□□□□ -0.06
VPS35-202ENST00000561713 IGKV1-16P04430 117 aa14.68□□□□□ -0.06
VPS35-202ENST00000561713 CD3GP09693 182 aa14.68□□□□□ -0.06
VPS35-202ENST00000561713 EGR2P11161 476 aaPredicted RBP14.68□□□□□ -0.06
VPS35-202ENST00000561713 TMEM50BP56557 158 aa14.68□□□□□ -0.06
VPS35-202ENST00000561713 RUNX1Q01196 453 aa14.68□□□□□ -0.06
VPS35-202ENST00000561713 TPBGQ13641 420 aa14.68□□□□□ -0.06
VPS35-202ENST00000561713 CMSS1Q9BQ75 279 aaKnown RBP14.68□□□□□ -0.06
VPS35-202ENST00000561713 DUSP21Q9H596 190 aa14.68□□□□□ -0.06
VPS35-202ENST00000561713 METTL1Q9UBP6 276 aaKnown RBP14.68□□□□□ -0.06
VPS35-202ENST00000561713 PROP1O75360 226 aa14.67□□□□□ -0.06
VPS35-202ENST00000561713 CA2P00918 260 aa14.67□□□□□ -0.06
VPS35-202ENST00000561713 LYL1P12980 280 aa14.67□□□□□ -0.06
VPS35-202ENST00000561713 ZBTB25P24278 435 aa14.67□□□□□ -0.06
VPS35-202ENST00000561713 MLLT11Q13015 90 aaPredicted RBP14.67□□□□□ -0.06
VPS35-202ENST00000561713 FAM89BQ8N5H3 189 aa14.67□□□□□ -0.06
VPS35-202ENST00000561713 ZNF383Q8NA42 475 aa14.67□□□□□ -0.06
VPS35-202ENST00000561713 OR5AN1Q8NGI8 311 aa14.67□□□□□ -0.06
VPS35-202ENST00000561713 FAM3DQ96BQ1 224 aa14.67□□□□□ -0.06
VPS35-202ENST00000561713 MS4A10Q96PG2 267 aa14.67□□□□□ -0.06
VPS35-202ENST00000561713 CHCHD6Q9BRQ6 235 aa14.67□□□□□ -0.06
VPS35-202ENST00000561713 TNCP24821 2201 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 TMEM272A0A1B0GTI8 110 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 OVOL1O14753 267 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 SAP30O75446 220 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 ARL6IP5O75915 188 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 LGALS1P09382 135 aaKnown RBP14.66□□□□□ -0.06
VPS35-202ENST00000561713 CPEP16870 476 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 CRIP2P52943 208 aaPredicted RBP14.66□□□□□ -0.06
VPS35-202ENST00000561713 OR10A3P58181 314 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 DEFA5Q01523 94 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 PSG5Q15238 335 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 MOGAT2Q3SYC2 334 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 ZNF660Q6AZW8 331 aaPredicted RBP14.66□□□□□ -0.06
VPS35-202ENST00000561713 UNQ5815/PRO19632Q6UWF5 114 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 OVCH2Q7RTZ1 564 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 HAPLN4Q86UW8 402 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 PPP1R27Q86WC6 154 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 GRPEL2Q8TAA5 225 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 EDARADDQ8WWZ3 215 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 MAFIPQ8WZ33 124 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 ARPC1AQ92747 370 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 DLX4Q92988 240 aaPredicted RBP14.66□□□□□ -0.06
VPS35-202ENST00000561713 TOLLIPQ9H0E2 274 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 RIMS4Q9H426 269 aaPredicted RBP14.66□□□□□ -0.06
VPS35-202ENST00000561713 RDH8Q9NYR8 311 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 HSF4Q9ULV5 492 aa14.66□□□□□ -0.06
VPS35-202ENST00000561713 HYDINQ4G0P3 5121 aa14.65□□□□□ -0.06
VPS35-202ENST00000561713 A0A075B6Q4 140 aa14.65□□□□□ -0.06
VPS35-202ENST00000561713 A0A0B4J203 849 aa14.65□□□□□ -0.06
VPS35-202ENST00000561713 LCE6AA0A183 80 aa14.65□□□□□ -0.06
VPS35-202ENST00000561713 SHISA3A0PJX4 238 aa14.65□□□□□ -0.06
VPS35-202ENST00000561713 M0R1X1 148 aa14.65□□□□□ -0.06
VPS35-202ENST00000561713 CRHBPP24387 322 aa14.65□□□□□ -0.06
VPS35-202ENST00000561713 TPPP2P59282 170 aa14.65□□□□□ -0.06
VPS35-202ENST00000561713 ACTBL2Q562R1 376 aa14.65□□□□□ -0.06
VPS35-202ENST00000561713 LFNGQ8NES3 379 aa14.65□□□□□ -0.06
VPS35-202ENST00000561713 C5orf30Q96GV9 206 aa14.65□□□□□ -0.06
VPS35-202ENST00000561713 MGLLQ99685 303 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms