RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 DVL1O14640 695 aa10.64□□□□□ -0.71
SNX1-211ENST00000560829 GPR137BO60478 399 aa10.64□□□□□ -0.71
SNX1-211ENST00000560829 RAMP3O60896 148 aa10.64□□□□□ -0.71
SNX1-211ENST00000560829 ATG12O94817 140 aa10.64□□□□□ -0.71
SNX1-211ENST00000560829 IGHV2-70P01814 119 aa10.64□□□□□ -0.71
SNX1-211ENST00000560829 TPT1P13693 172 aaKnown RBP10.64□□□□□ -0.71
SNX1-211ENST00000560829 AKR1C2P52895 323 aa10.64□□□□□ -0.71
SNX1-211ENST00000560829 CT45A1Q5HYN5 189 aa10.64□□□□□ -0.71
SNX1-211ENST00000560829 BTNL3Q6UXE8 466 aa10.64□□□□□ -0.71
SNX1-211ENST00000560829 Q6ZRM9 215 aa10.64□□□□□ -0.71
SNX1-211ENST00000560829 CT45A3Q8NHU0 189 aa10.64□□□□□ -0.71
SNX1-211ENST00000560829 LAMP3Q9UQV4 416 aa10.64□□□□□ -0.71
SNX1-211ENST00000560829 MMP24Q9Y5R2 645 aa10.64□□□□□ -0.71
SNX1-211ENST00000560829 AUP1Q9Y679 476 aa10.64□□□□□ -0.71
SNX1-211ENST00000560829 C17orf98A8MV24 154 aa10.63□□□□□ -0.71
SNX1-211ENST00000560829 SLC31A2O15432 143 aa10.63□□□□□ -0.71
SNX1-211ENST00000560829 RBFOX2O43251 390 aaKnown RBP eCLIP10.63□□□□□ -0.71
SNX1-211ENST00000560829 SOD3P08294 240 aa10.63□□□□□ -0.71
SNX1-211ENST00000560829 PVALBP20472 110 aaPredicted RBP10.63□□□□□ -0.71
SNX1-211ENST00000560829 S100A1P23297 94 aa10.63□□□□□ -0.71
SNX1-211ENST00000560829 POLR2GP62487 172 aaKnown RBP eCLIP10.63□□□□□ -0.71
SNX1-211ENST00000560829 UTF1Q5T230 341 aa10.63□□□□□ -0.71
SNX1-211ENST00000560829 TMEM200BQ69YZ2 307 aa10.63□□□□□ -0.71
SNX1-211ENST00000560829 HEPN1Q6WQI6 88 aa10.63□□□□□ -0.71
SNX1-211ENST00000560829 BAP18Q8IXM2 172 aa10.63□□□□□ -0.71
SNX1-211ENST00000560829 NEU4Q8WWR8 484 aaPredicted RBP10.63□□□□□ -0.71
SNX1-211ENST00000560829 ZNF714Q96N38 554 aa10.63□□□□□ -0.71
SNX1-211ENST00000560829 DSCAMO60469 2012 aa10.63□□□□□ -0.71
SNX1-211ENST00000560829 A0A1W2PPR1 153 aa10.62□□□□□ -0.71
SNX1-211ENST00000560829 C19orf84I3L1E1 186 aa10.62□□□□□ -0.71
SNX1-211ENST00000560829 MMP23AO75900 390 aa10.62□□□□□ -0.71
SNX1-211ENST00000560829 GAPDHP04406 335 aaKnown RBP10.62□□□□□ -0.71
SNX1-211ENST00000560829 NMBP08949 121 aa10.62□□□□□ -0.71
SNX1-211ENST00000560829 TMEM33P57088 247 aa10.62□□□□□ -0.71
SNX1-211ENST00000560829 PRAMEF5Q5TYX0 476 aa10.62□□□□□ -0.71
SNX1-211ENST00000560829 SLC25A48Q6ZT89 311 aaKnown RBP10.62□□□□□ -0.71
SNX1-211ENST00000560829 RNASE11Q8TAA1 199 aaKnown RBP10.62□□□□□ -0.71
SNX1-211ENST00000560829 SLC25A32Q9H2D1 315 aa10.62□□□□□ -0.71
SNX1-211ENST00000560829 CACNG5Q9UF02 275 aa10.62□□□□□ -0.71
SNX1-211ENST00000560829 COL6A6A6NMZ7 2263 aa10.62□□□□□ -0.71
SNX1-211ENST00000560829 NBASA2RRP1 2371 aa10.62□□□□□ -0.71
SNX1-211ENST00000560829 TANC2Q9HCD6 1990 aa10.62□□□□□ -0.71
SNX1-211ENST00000560829 ACACBO00763 2458 aa10.62□□□□□ -0.71
SNX1-211ENST00000560829 ICE1Q9Y2F5 2266 aa10.62□□□□□ -0.71
SNX1-211ENST00000560829 TPRP12270 2363 aaKnown RBP10.62□□□□□ -0.71
SNX1-211ENST00000560829 TRBV23-1A0A0A0MS06 115 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 FAM90A26D6RGX4 464 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 LYNX1G3V0Z9 82 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 RAB29O14966 203 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 S1PR2O95136 353 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 LYNX1P0DP58 116 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 DAOP14920 347 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 EPHA1P21709 976 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 EIF5AP63241 154 aaKnown RBP10.61□□□□□ -0.71
SNX1-211ENST00000560829 NCR3LG1Q68D85 454 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 ODF3L1Q8IXM7 274 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 OR2C3Q8N628 320 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 ZNF251Q9BRH9 671 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 ZC4H2Q9NQZ6 224 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 LYRM2Q9NU23 88 aaPredicted RBP10.61□□□□□ -0.71
SNX1-211ENST00000560829 FBXL17Q9UF56 701 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 HCFC1P51610 2035 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 ROS1P08922 2347 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 M0R1X1 148 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 GPR37O15354 613 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 NFYBP25208 207 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 ZNF816Q0VGE8 651 aaPredicted RBP10.61□□□□□ -0.71
SNX1-211ENST00000560829 TMEM155Q4W5P6 130 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 RPL39P5Q59GN2 51 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 OR2B11Q5JQS5 317 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 ZNF841Q6ZN19 808 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 C8orf31Q8N9H6 132 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 DDB2Q92466 427 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 LEAP2Q969E1 77 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 MED9Q9NWA0 146 aa10.61□□□□□ -0.71
SNX1-211ENST00000560829 RAI1Q7Z5J4 1906 aaPredicted RBP10.6□□□□□ -0.71
SNX1-211ENST00000560829 SAA2-SAA4A0A096LPE2 208 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 WRBO00258 174 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 TOR1AO14656 332 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 SSSCA1O60232 199 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 JTBO76095 146 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 GOSR1O95249 250 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 TMEM50AO95807 157 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 IGHV3-7P01780 117 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 SAA2P0DJI9 122 aaPredicted RBP10.6□□□□□ -0.71
SNX1-211ENST00000560829 CCL3L1P16619 93 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 KIR2DS2P43631 304 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 PAX9P55771 341 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 DLX6P56179 175 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 EWSR1Q01844 656 aaKnown RBP eCLIP10.6□□□□□ -0.71
SNX1-211ENST00000560829 IZUMO4Q1ZYL8 232 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 MIDNQ504T8 468 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 C1orf229Q6ZS94 237 aaPredicted RBP10.6□□□□□ -0.71
SNX1-211ENST00000560829 H1FXQ92522 213 aaKnown RBP10.6□□□□□ -0.71
SNX1-211ENST00000560829 RAB39BQ96DA2 213 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 RAB40CQ96S21 281 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 MAGT1Q9H0U3 335 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 ARFGEF3Q5TH69 2177 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 KIAA2026Q5HYC2 2103 aa10.6□□□□□ -0.71
SNX1-211ENST00000560829 B8ZZF3 427 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms