RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 EGR2P11161 476 aaPredicted RBP7.94□□□□□ -1.14
LDLR-214ENST00000560628 MC5RP33032 325 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 CHRNA7P36544 502 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 HLA-DRB3P79483 266 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 MLLT11Q13015 90 aaPredicted RBP7.94□□□□□ -1.14
LDLR-214ENST00000560628 FHL3Q13643 280 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 TRAM1Q15629 374 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 PLAC9Q5JTB6 97 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 ASPHD1Q5U4P2 390 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 ZNF660Q6AZW8 331 aaPredicted RBP7.94□□□□□ -1.14
LDLR-214ENST00000560628 FAM71F2Q6NXP2 309 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 PRSS48Q7RTY5 328 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 MINDY2Q8NBR6 621 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 DCUN1D4Q92564 292 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 HSF4Q9ULV5 492 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 WASHC3Q9Y3C0 194 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 NUBP2Q9Y5Y2 271 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 V9GY05 133 aa7.94□□□□□ -1.14
LDLR-214ENST00000560628 TMEM272A0A1B0GTI8 110 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 OR5H14A6NHG9 310 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 TRDCB7Z8K6 153 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 ITGB1BP1O14713 200 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 DENRO43583 198 aaKnown RBP7.93□□□□□ -1.14
LDLR-214ENST00000560628 CD3GP09693 182 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 OR8U8P0C7N1 319 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 PSMA1P25786 263 aaKnown RBP7.93□□□□□ -1.14
LDLR-214ENST00000560628 OR10A3P58181 314 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 RPS16P62249 146 aaKnown RBP7.93□□□□□ -1.14
LDLR-214ENST00000560628 RUNX1Q01196 453 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 ZNF616Q08AN1 781 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 PSG5Q15238 335 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 PPP1R27Q86WC6 154 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 OR56B1Q8NGI3 324 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 OR5AN1Q8NGI8 311 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 EDARADDQ8WWZ3 215 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 CNBD2Q96M20 576 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 MS4A10Q96PG2 267 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 ASCL2Q99929 193 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 FAM103A1Q9BTL3 118 aaKnown RBP7.93□□□□□ -1.14
LDLR-214ENST00000560628 ACOT13Q9NPJ3 140 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 C12orf4Q9NQ89 552 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 RDH8Q9NYR8 311 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 METTL1Q9UBP6 276 aaKnown RBP7.93□□□□□ -1.14
LDLR-214ENST00000560628 ZNF221Q9UK13 617 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 RAB22AQ9UL26 194 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 MGAT4AQ9UM21 535 aa7.93□□□□□ -1.14
LDLR-214ENST00000560628 FOXA2Q9Y261 457 aaPredicted RBP7.93□□□□□ -1.14
LDLR-214ENST00000560628 LSM4Q9Y4Z0 139 aaKnown RBP7.93□□□□□ -1.14
LDLR-214ENST00000560628 M0R1X1 148 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 LDLRAD4O15165 306 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 LY86O95711 162 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 IGHV3-11P01762 117 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 IGKV1-16P04430 117 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 PSMD7P51665 324 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 SLURP1P55000 103 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 TMEM267Q0VDI3 215 aaPredicted RBP7.92□□□□□ -1.14
LDLR-214ENST00000560628 DCTN2Q13561 401 aaKnown RBP7.92□□□□□ -1.14
LDLR-214ENST00000560628 SSX1Q16384 188 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 MOGAT2Q3SYC2 334 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 C19orf54Q5BKX5 351 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 UNQ5815/PRO19632Q6UWF5 114 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 IZUMO2Q6UXV1 221 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 ZNF383Q8NA42 475 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 LFNGQ8NES3 379 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 DLX4Q92988 240 aaPredicted RBP7.92□□□□□ -1.14
LDLR-214ENST00000560628 PTX4Q96A99 478 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 RAB3CQ96E17 227 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 GHITMQ9H3K2 345 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 KCNK7Q9Y2U2 307 aa7.92□□□□□ -1.14
LDLR-214ENST00000560628 A0A075B6Q4 140 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 A0A0B4J203 849 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 SHISA3A0PJX4 238 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 OVOL1O14753 267 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 BET1O15155 118 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 FABP7O15540 132 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 RBBP9O75884 186 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 CA2P00918 260 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 TFAP2AP05549 437 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 OR8U9P0C7N5 309 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 GSTT2P0CG29 244 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 GSTT2BP0CG30 244 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 GNB3P16520 340 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 CRIP2P52943 208 aaPredicted RBP7.91□□□□□ -1.14
LDLR-214ENST00000560628 MRPS15P82914 257 aaKnown RBP7.91□□□□□ -1.14
LDLR-214ENST00000560628 ACTBL2Q562R1 376 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 IGSF11Q5DX21 431 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 ZNF562Q6V9R5 426 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 MAFIPQ8WZ33 124 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 TSNAXQ99598 290 aaKnown RBP7.91□□□□□ -1.14
LDLR-214ENST00000560628 RNF5Q99942 180 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 TOLLIPQ9H0E2 274 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 VCX3BQ9H321 246 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.91□□□□□ -1.148e-6■■■■□ 26.5
LDLR-214ENST00000560628 TPSG1Q9NRR2 321 aa7.91□□□□□ -1.14
LDLR-214ENST00000560628 ZNF230Q9UIE0 474 aaPredicted RBP7.91□□□□□ -1.14
LDLR-214ENST00000560628 ZNF256Q9Y2P7 627 aaPredicted RBP7.91□□□□□ -1.14
LDLR-214ENST00000560628 IGHV4OR15-8A0A075B7B6 117 aa7.9□□□□□ -1.14
LDLR-214ENST00000560628 A0A087WW49 117 aa7.9□□□□□ -1.14
LDLR-214ENST00000560628 TRAV1-2A0A0B4J238 106 aa7.9□□□□□ -1.14
LDLR-214ENST00000560628 SMIM30A4D0T7 59 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms