RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 OR8U1Q8NH10 309 aa10.38□□□□□ -0.75
NEDD8-208ENST00000560427 SNAPC3Q92966 411 aa10.38□□□□□ -0.75
NEDD8-208ENST00000560427 ABHD14BQ96IU4 210 aa10.38□□□□□ -0.75
NEDD8-208ENST00000560427 NXF2Q9GZY0 626 aaKnown RBP10.38□□□□□ -0.75
NEDD8-208ENST00000560427 ZNF702PQ9H963 129 aa10.38□□□□□ -0.75
NEDD8-208ENST00000560427 MRPS7Q9Y2R9 242 aaKnown RBP10.38□□□□□ -0.75
NEDD8-208ENST00000560427 RNF114Q9Y508 228 aa10.38□□□□□ -0.75
NEDD8-208ENST00000560427 RBM7Q9Y580 266 aaKnown RBP10.38□□□□□ -0.75
NEDD8-208ENST00000560427 A3GALT2U3KPV4 340 aa10.38□□□□□ -0.75
NEDD8-208ENST00000560427 IGHV3-72A0A0B4J1Y9 119 aa10.37□□□□□ -0.75
NEDD8-208ENST00000560427 RBBP9O75884 186 aa10.37□□□□□ -0.75
NEDD8-208ENST00000560427 RCVRNP35243 200 aa10.37□□□□□ -0.75
NEDD8-208ENST00000560427 LUMP51884 338 aaPredicted RBP10.37□□□□□ -0.75
NEDD8-208ENST00000560427 TAGLNQ01995 201 aaKnown RBP10.37□□□□□ -0.75
NEDD8-208ENST00000560427 SHISA2Q6UWI4 295 aa10.37□□□□□ -0.75
NEDD8-208ENST00000560427 SNX29P2Q8IUI4 249 aa10.37□□□□□ -0.75
NEDD8-208ENST00000560427 LAX1Q8IWV1 398 aa10.37□□□□□ -0.75
NEDD8-208ENST00000560427 ZNF645Q8N7E2 425 aa10.37□□□□□ -0.75
NEDD8-208ENST00000560427 C5orf56Q8N8D9 126 aa10.37□□□□□ -0.75
NEDD8-208ENST00000560427 WFDC12Q8WWY7 111 aa10.37□□□□□ -0.75
NEDD8-208ENST00000560427 ADTRPQ96IZ2 230 aa10.37□□□□□ -0.75
NEDD8-208ENST00000560427 C6orf62Q9GZU0 229 aaPredicted RBP10.37□□□□□ -0.75
NEDD8-208ENST00000560427 MIXL1Q9H2W2 232 aa10.37□□□□□ -0.75
NEDD8-208ENST00000560427 ZNF736B4DX44 427 aaPredicted RBP10.36□□□□□ -0.75
NEDD8-208ENST00000560427 H0YJW9 148 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 CTDSP2O14595 271 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 APOA2P02652 100 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 CT45A6P0DMU7 189 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 CT45A5P0DMU8 189 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 CT45A7P0DMV0 189 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 OR5H8P0DN80 308 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 ACTBP60709 375 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 CDK10Q15131 360 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 MSMO1Q15800 293 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 FBLN7Q53RD9 439 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 ACTBL2Q562R1 376 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 OVCH2Q7RTZ1 564 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 PDPNQ86YL7 162 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 MCFD2Q8NI22 146 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 TAF15Q92804 592 aaKnown RBP eCLIP10.36□□□□□ -0.75
NEDD8-208ENST00000560427 RNF5Q99942 180 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 LIN7CQ9NUP9 197 aaKnown RBP10.36□□□□□ -0.75
NEDD8-208ENST00000560427 SDHAF2Q9NX18 166 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 RNF150Q9ULK6 438 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 WASHC3Q9Y3C0 194 aa10.36□□□□□ -0.75
NEDD8-208ENST00000560427 MEIS3P1A6NDR6 274 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 M0R1X1 148 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 PROP1O75360 226 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 AMY1AP04745 511 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 AMY2AP04746 511 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 NFYAP23511 347 aaPredicted RBP10.35□□□□□ -0.75
NEDD8-208ENST00000560427 THBS3P49746 956 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 BLCAPP62952 87 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 SSBP1Q04837 148 aaKnown RBP10.35□□□□□ -0.75
NEDD8-208ENST00000560427 HNF4GQ14541 408 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 ABCA11PQ4W5N1 156 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 PYHIN1Q6K0P9 492 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 FAM131AQ6UXB0 335 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 OR5H2Q8NGV7 314 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 GIMAP1Q8WWP7 306 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 BORCS5Q969J3 196 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 DGCR14Q96DF8 476 aaKnown RBP10.35□□□□□ -0.75
NEDD8-208ENST00000560427 MMP27Q9H306 513 aa10.35□□□□□ -0.75
NEDD8-208ENST00000560427 DNHD1Q96M86 4753 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 NCBP2LA6PVI3 153 aaKnown RBP10.34□□□□□ -0.75
NEDD8-208ENST00000560427 GABARAPH6UMI1 98 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 CTDSPLO15194 276 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 SPDEFO95238 335 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 PPYP01298 95 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 RRASP10301 218 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 TBPP20226 339 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 FCGR2CP31995 323 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 VDAC2P45880 294 aaPredicted RBP10.34□□□□□ -0.75
NEDD8-208ENST00000560427 CBX3Q13185 183 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 DYRK1AQ13627 763 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 MMDQ15546 238 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 ARSJQ5FYB0 599 aaPredicted RBP10.34□□□□□ -0.75
NEDD8-208ENST00000560427 FAM71E2Q8N5Q1 922 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 Q8N9W7 124 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 ZNF383Q8NA42 475 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 ZBTB34Q8NCN2 500 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 NPBQ8NG41 125 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 FCAMRQ8WWV6 532 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 DIRAS2Q96HU8 199 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 ABHD1Q96SE0 405 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 RASL11BQ9BPW5 248 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 DCUN1D5Q9BTE7 237 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 SERTAD4Q9NUC0 356 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 EHFQ9NZC4 300 aa10.34□□□□□ -0.75
NEDD8-208ENST00000560427 ZNF107Q9UII5 783 aaPredicted RBP10.34□□□□□ -0.75
NEDD8-208ENST00000560427 ANK2Q01484 3957 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 H7C2Y5 167 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 NBR2O15453 112 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 KCNAB3O43448 404 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 NDUFA3O95167 84 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 AADACP22760 399 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 DUTP33316 252 aaKnown RBP10.33□□□□□ -0.76
NEDD8-208ENST00000560427 IL18Q14116 193 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 RTL8BQ17RB0 113 aa10.33□□□□□ -0.76
NEDD8-208ENST00000560427 VAX1Q5SQQ9 334 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms