RNA–Protein interactions for RNA: ENST00000559694.5

CARMIL3-202, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 5

Gene CARMIL3, Length 4,319 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-202ENST00000559694 CLCF1Q9UBD9 225 aa9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 SSUH2Q9Y2M2 353 aa9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 ANKRD11Q6UB99 2663 aaPredicted RBP9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 MBD3L4A6NDZ8 208 aaPredicted RBP9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 MBD3L3A6NE82 208 aaPredicted RBP9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 OOEPA6NGQ2 149 aa9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 MBD3L5A6NJ08 208 aaPredicted RBP9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 DHRS7CA6NNS2 312 aa9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 TRDCB7Z8K6 153 aa9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 MGST3O14880 152 aa9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 CA11O75493 328 aa9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 CD74P04233 296 aa9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 MPV17P39210 176 aa9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 PMELP40967 661 aa9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 NPBWR2P48146 333 aa9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 FGF8P55075 233 aaPredicted RBP9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 KRTDAPP60985 99 aa9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 MBD3L2Q8NHZ7 208 aaPredicted RBP9.09□□□□□ -0.95
CARMIL3-202ENST00000559694 CSPG4Q6UVK1 2322 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 RNF222A6NCQ9 220 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 CLN5O75503 358 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 RAB4AP20338 218 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 CDX1P47902 265 aaPredicted RBP9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 RAB7AP51149 207 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 RPS11P62280 158 aaKnown RBP eCLIP9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 PLAURQ03405 335 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 PNRC1Q12796 327 aaPredicted RBP9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 ETV3LQ6ZN32 361 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 LYZL2Q7Z4W2 148 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 OR10A7Q8NGE5 316 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 PERPQ96FX8 193 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 WFIKKN1Q96NZ8 548 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 VAMP8Q9BV40 100 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 REPIN1Q9BWE0 567 aaKnown RBP9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 PITPNC1Q9UKF7 332 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 WISP1O95388 367 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 MGST1P10620 155 aaKnown RBP9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 CDKN1AP38936 164 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 FAM201AQ5SY85 155 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 OR10C1Q96KK4 312 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 ACTR3CQ9C0K3 210 aaPredicted RBP9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 SIRT7Q9NRC8 400 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 TRAPPC1Q9Y5R8 145 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 HTTP42858 3142 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 TRBV5-7A0A0A0MS05 114 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 hCG_38984A0A1B0GV85 526 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 CXorf65A6NEN9 183 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 CBY3A6NI87 242 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 OR2H2O95918 312 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 P2RY1P47900 373 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 SUMO1P63165 101 aaKnown RBP9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 ZNF260Q3ZCT1 412 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 IGF2-ASQ6U949 168 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 HOGA1Q86XE5 327 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 IL22RA2Q969J5 263 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 PINX1Q96BK5 328 aaKnown RBP9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 ADGRG7Q96K78 797 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 C1QTNF5Q9BXJ0 243 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 HSF4Q9ULV5 492 aa9.08□□□□□ -0.96
CARMIL3-202ENST00000559694 A0A1W2PPE3 182 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 GAPDHP04406 335 aaKnown RBP9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 CD81P60033 236 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 EFNB1P98172 346 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 NHLH2Q02577 135 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 ZNF154Q13106 437 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 BTNL8Q6UX41 500 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 PTX4Q96A99 478 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 TMEM68Q96MH6 324 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 AQP10Q96PS8 301 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 SPRY4Q9C004 299 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 PKIBQ9C010 78 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 GPR132Q9UNW8 380 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 ANKHD1Q8IWZ3 2542 aaKnown RBP9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 LOC390937A0A1W2PQ73 354 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 MSGN1A6NI15 193 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 SUB1P53999 127 aaKnown RBP eCLIP9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 TMEM267Q0VDI3 215 aaPredicted RBP9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 LPAR5Q9H1C0 372 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 C3orf85A0A1B0GTC6 90 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 MAP1LC3B2A6NCE7 125 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 WNT9BO14905 357 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 COX5AP20674 150 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 ATP6V0CP27449 155 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 UBE2G2P60604 165 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 HIST1H3AP68431 136 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 VAMP3Q15836 100 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 VMA21Q3ZAQ7 101 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 CYB561D1Q8N8Q1 229 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 MAP1LC3BQ9GZQ8 125 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 PLXND1Q9Y4D7 1925 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 IGHV1-18A0A0C4DH31 117 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 CHRNA7P36544 502 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 TPPP2P59282 170 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 RANP62826 216 aaKnown RBP9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 SRSF3P84103 164 aaKnown RBP9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 BSXQ3C1V8 233 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 C1orf100Q5SVJ3 147 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 ZNF880Q6PDB4 577 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 OR10P1Q8NGE3 313 aa9.07□□□□□ -0.96
CARMIL3-202ENST00000559694 ZNF524Q96C55 264 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms