RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 PSG4Q00888 419 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 COL10A1Q03692 680 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 HIST2H2BEQ16778 126 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.13□□□□□ -1.43
USP3-210ENST00000559192 LURAP1LQ8IV03 231 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 SP7Q8TDD2 431 aaPredicted RBP6.13□□□□□ -1.43
USP3-210ENST00000559192 HIST1H2BHQ93079 126 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 HIST1H2BNQ99877 126 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 HIST1H2BMQ99879 126 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 ZNF319Q9P2F9 582 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 HELZP42694 1942 aaKnown RBP6.13□□□□□ -1.43
USP3-210ENST00000559192 SDK1Q7Z5N4 2213 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 LDLRAD4O15165 306 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 AGAP20933 346 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 CD1BP29016 333 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 NXPH1P58417 271 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 ICAM4Q14773 271 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 CSRP2Q16527 193 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 HEPN1Q6WQI6 88 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 TMEM183AQ8IXX5 376 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 FAM216AQ8WUB2 273 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 CRISPLD2Q9H0B8 497 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 SLC45A2Q9UMX9 530 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 WIPI2Q9Y4P8 454 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 TMEM30CPA0ZSE6 113 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 LAMTOR5O43504 91 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 MPZP25189 248 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 HOXA6P31267 233 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 ERHP84090 104 aaKnown RBP6.13□□□□□ -1.43
USP3-210ENST00000559192 C3AR1Q16581 482 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 CLDND2Q8NHS1 167 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 SSMEM1Q8WWF3 244 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 LYZL4Q96KX0 146 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 TUBA4BQ9H853 241 aa6.13□□□□□ -1.43
USP3-210ENST00000559192 IGKV1-9A0A0C4DH69 117 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 H0Y980 276 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 KLF7O75840 302 aaPredicted RBP6.12□□□□□ -1.43
USP3-210ENST00000559192 IGHEP01854 428 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 FAM166AQ6J272 317 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 CALHM1Q8IU99 346 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 R3HDM4Q96D70 268 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 GMPPAQ96IJ6 420 aaPredicted RBP6.12□□□□□ -1.43
USP3-210ENST00000559192 C18orf12Q96KH6 178 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 MEGF9Q9H1U4 602 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 GPR35Q9HC97 309 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 PLXNA2O75051 1894 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 PLXNB3Q9ULL4 1909 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 GRIFINA4D1Z8 144 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 CA1P00915 261 aaPredicted RBP6.12□□□□□ -1.43
USP3-210ENST00000559192 HERPUD1Q15011 391 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 WDFY1Q8IWB7 410 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 ACY3Q96HD9 319 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 DOCK6Q96HP0 2047 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 CTXND1A0A1B0GTU2 59 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 GNB1P62873 340 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 MEF2BQ02080 365 aaPredicted RBP6.12□□□□□ -1.43
USP3-210ENST00000559192 HES3Q5TGS1 186 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 OR10S1Q8NGN2 331 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 ZNF501Q96CX3 271 aaPredicted RBP6.12□□□□□ -1.43
USP3-210ENST00000559192 MUCL1Q96DR8 90 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 COMMD5Q9GZQ3 224 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 PARLQ9H300 379 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 SCN8AQ9UQD0 1980 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 A0A1B0GWB2 263 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 NDUFB4O95168 129 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 LIFP15018 202 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 IL3RAP26951 378 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 SRSF4Q08170 494 aaKnown RBP6.12□□□□□ -1.43
USP3-210ENST00000559192 MESP1Q9BRJ9 268 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 TINAGQ9UJW2 476 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 TRAV38-1A0A0B4J264 116 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 A0A0J9YW62 118 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 SYNGR1O43759 233 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 CD46P15529 392 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 EGR1P18146 543 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 OTX1P32242 354 aaPredicted RBP6.12□□□□□ -1.43
USP3-210ENST00000559192 SLC35B1P78383 322 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 RIPPLY2Q5TAB7 128 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 C6orf15Q6UXA7 325 aaPredicted RBP6.12□□□□□ -1.43
USP3-210ENST00000559192 TUSC5Q8IXB3 177 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 NUDT10Q8NFP7 164 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 OR8B3Q8NGG8 313 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 SGMS2Q8NHU3 365 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 MARS2Q96GW9 593 aaKnown RBP6.12□□□□□ -1.43
USP3-210ENST00000559192 SIGMAR1Q99720 223 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 TM2D1Q9BX74 207 aa6.12□□□□□ -1.43
USP3-210ENST00000559192 URB1O60287 2271 aaKnown RBP6.11□□□□□ -1.43
USP3-210ENST00000559192 CLPSP04118 112 aa6.11□□□□□ -1.43
USP3-210ENST00000559192 BTF3P20290 206 aaKnown RBP6.11□□□□□ -1.43
USP3-210ENST00000559192 SRP14P37108 136 aaKnown RBP6.11□□□□□ -1.43
USP3-210ENST00000559192 RAC3P60763 192 aa6.11□□□□□ -1.43
USP3-210ENST00000559192 SPINK14Q6IE38 97 aa6.11□□□□□ -1.43
USP3-210ENST00000559192 TMEM108Q6UXF1 575 aa6.11□□□□□ -1.43
USP3-210ENST00000559192 OR1N2Q8NGR9 330 aa6.11□□□□□ -1.43
USP3-210ENST00000559192 MRPL37Q9BZE1 423 aaKnown RBP6.11□□□□□ -1.43
USP3-210ENST00000559192 TMEM265A0A087WTH1 108 aa6.11□□□□□ -1.43
USP3-210ENST00000559192 TRBV6-7A0A0A0MS04 114 aa6.11□□□□□ -1.43
USP3-210ENST00000559192 F5H697 171 aa6.11□□□□□ -1.43
USP3-210ENST00000559192 SMPD2O60906 423 aa6.11□□□□□ -1.43
USP3-210ENST00000559192 RHOBP62745 196 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms