RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 UBQLN4Q9NRR5 601 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 FGFR1OP2Q9NVK5 253 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 MRPL16Q9NX20 251 aaKnown RBP0.78□□□□□ -2.28
USP3-209ENST00000558925 TAS2R9Q9NYW1 312 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 VPREB3Q9UKI3 123 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 POLR3HQ9Y535 204 aaPredicted RBP0.78□□□□□ -2.28
USP3-209ENST00000558925 MINOS1-NBL1R4GNA1 71 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 A0A1W2PP64 1363 aa0.78□□□□□ -2.28
USP3-209ENST00000558925 ADAMTSL1Q8N6G6 1762 aa0.78□□□□□ -2.29
USP3-209ENST00000558925 SCN9AQ15858 1988 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 TGIF2-C20orf24A0A0A6YYL0 155 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 IGHV3-73A0A0B4J1V6 119 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 TEX50A0A1B0GTY4 177 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 LINC00862A6NCI5 91 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 E7EQL1 145 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 COPEO14579 308 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 TGOLN2O43493 480 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 DENRO43583 198 aaKnown RBP0.77□□□□□ -2.29
USP3-209ENST00000558925 LY6HO94772 140 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 LYPLA2O95372 231 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 CDS2O95674 445 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 CRYBA1P05813 215 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 IL3P08700 152 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 OCM2P0CE71 109 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 C8orf88P0DMB2 117 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 IGHV3-30-3P0DP02 117 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 CCL3P10147 92 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 OPRM1P35372 400 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 CD79BP40259 229 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 CA7P43166 264 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 TCL1AP56279 114 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 TMEM33P57088 247 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 RPS24P62847 133 aaKnown RBP0.77□□□□□ -2.29
USP3-209ENST00000558925 SLC35A2P78381 396 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 HLA-DRB3P79483 266 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 FABP5Q01469 135 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 HES1Q14469 280 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 SPIN4Q56A73 249 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 COQ5Q5HYK3 327 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 C1orf194Q5T5A4 169 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 C1orf195Q5TG92 126 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 PTRHD1Q6GMV3 140 aaKnown RBP0.77□□□□□ -2.29
USP3-209ENST00000558925 OR10K2Q6IF99 312 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 HCP5Q6MZN7 132 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 RASSF6Q6ZTQ3 369 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 SPATA12Q7Z6I5 190 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 BAP18Q8IXM2 172 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 LRRC34Q8IZ02 419 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 Q8N402 240 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 DAND5Q8N907 189 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 DNAAF3Q8N9W5 541 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 OR11H1Q8NG94 326 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 OR2T4Q8NH00 348 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 OR4K13Q8NH42 304 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 RAB8BQ92930 207 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 TMBIM1Q969X1 311 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 PTH2Q96A98 100 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 TBX5Q99593 518 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 DHRS9Q9BPW9 319 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 UPK3BQ9BT76 320 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 EIF5A2Q9GZV4 153 aaKnown RBP0.77□□□□□ -2.29
USP3-209ENST00000558925 AICDAQ9GZX7 198 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 C11orf1Q9H5F2 150 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 SLC2A9Q9NRM0 540 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 SPANXB1Q9NS25 103 aaPredicted RBP0.77□□□□□ -2.29
USP3-209ENST00000558925 USE1Q9NZ43 259 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 EMC3Q9P0I2 261 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 CRCT1Q9UGL9 99 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 DKKL1Q9UK85 242 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 MCTS1Q9ULC4 181 aaKnown RBP0.77□□□□□ -2.29
USP3-209ENST00000558925 HEY1Q9Y5J3 304 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 PCYT1BQ9Y5K3 369 aaPredicted RBP0.77□□□□□ -2.29
USP3-209ENST00000558925 HSPE1-MOB4S4R3N1 261 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 EVC2Q86UK5 1308 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 BRD4O60885 1362 aaPredicted RBP0.77□□□□□ -2.29
USP3-209ENST00000558925 SPATA31E1Q6ZUB1 1445 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 NACADO15069 1562 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 CEP170Q5SW79 1584 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 LTBP4Q8N2S1 1624 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 HEATR5AQ86XA9 2040 aa0.77□□□□□ -2.29
USP3-209ENST00000558925 KIF15Q9NS87 1388 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 TRAV8-1A0A0A6YYK1 113 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 LRRN3E7EW58 273 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 G3V3Q6 166 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 TP53I11O14683 189 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 SLC16A4O15374 487 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 GSTZ1O43708 216 aaPredicted RBP0.76□□□□□ -2.29
USP3-209ENST00000558925 ZNF73O43830 326 aaPredicted RBP0.76□□□□□ -2.29
USP3-209ENST00000558925 HLA-DQB2P05538 268 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 CPMP14384 443 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 NQO1P15559 274 aaKnown RBP0.76□□□□□ -2.29
USP3-209ENST00000558925 SLC25A16P16260 332 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 CCL1P22362 96 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 MAP2K4P45985 399 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 UBE2IP63279 158 aaKnown RBP0.76□□□□□ -2.29
USP3-209ENST00000558925 ZNF117Q03924 483 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 TNFRSF9Q07011 255 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 PRDX4Q13162 271 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 LRRC75BQ2VPJ9 315 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 ACSBG2Q5FVE4 666 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms