RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 ADAMTSL3P82987 1691 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 PHLPP2Q6ZVD8 1323 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 SCN9AQ15858 1988 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 IGHV1-18A0A0C4DH31 117 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 TMEM212A6NML5 194 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 H3BT86 120 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 POLR3GO15318 223 aaPredicted RBP-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 FABP7O15540 132 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 SC5DO75845 299 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 PPBPP02775 128 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 CRYBA1P05813 215 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 CDK2P24941 298 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 GTF2BQ00403 316 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 PLPPR5Q32ZL2 321 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 CAVIN4Q5BKX8 364 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 FAM162BQ5T6X4 162 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 FAHD1Q6P587 224 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 LYZL1Q6UWQ5 148 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 PID1Q7Z2X4 250 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 TMCO2Q7Z6W1 182 aaPredicted RBP-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 LINC00523Q86TU6 105 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 OR5K1Q8NHB7 308 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 MRAP2Q96G30 205 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 OBSCN-AS1Q96MR7 158 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 IMMP2LQ96T52 175 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 TTTY13Q9BZ97 58 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 MED28Q9H204 178 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 NAT8Q9UHE5 227 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 LINC00527Q9UJ94 153 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 RABL2BQ9UNT1 228 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 ARAP3Q8WWN8 1544 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 SLX4Q8IY92 1834 aa-0.04□□□□□ -2.42
VPS13C-205ENST00000558088 TRAV38-1A0A0B4J264 116 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 A0A0D9SEW6 157 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 EFCAB9A8MZ26 197 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 H7C2G1 150 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 hCG_2039718K7EN88 272 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 GSTZ1O43708 216 aaPredicted RBP-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 CD7P09564 240 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 STAG3L3P0CL85 134 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 CD24P25063 80 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 PEX19P40855 299 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 AQP5P55064 265 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 CLDN8P56748 225 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 STK38Q15208 465 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 TBC1D28Q2M2D7 210 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 TEX36Q5VZQ5 186 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 TTC33Q6PID6 262 aaPredicted RBP-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 SSX6Q7RTT6 188 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 DCXRQ7Z4W1 244 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 FAM19A1Q7Z5A9 133 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 SPATA12Q7Z6I5 190 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 C12orf29Q8N999 325 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 ZNF565Q8N9K5 539 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 SMCR5Q8TEV8 140 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 C12orf43Q96C57 262 aaKnown RBP-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 NMNAT3Q96T66 252 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 MAP1LC3CQ9BXW4 147 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 NUMA1Q14980 2115 aa-0.05□□□□□ -2.42
VPS13C-205ENST00000558088 EML5Q05BV3 1969 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 SHOX2O60902 331 aaPredicted RBP-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 ASS1P00966 412 aaKnown RBP-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 NPYP01303 97 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 ADORA1P30542 326 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 ZNF93P35789 620 aaPredicted RBP-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 CA7P43166 264 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 GABRA2P47869 451 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 EVX1P49640 407 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 TPI1P60174 286 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 C1DQ13901 141 aaKnown RBP-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 C9orf64Q5T6V5 341 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 UMODL1-AS1Q8N2C9 162 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 Q8N6K4 173 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 TSKUQ8WUA8 353 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 TESCQ96BS2 214 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 ZNF707Q96C28 371 aaPredicted RBP-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 SFRP2Q96HF1 295 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 NKX6-2Q9C056 277 aaPredicted RBP-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 OR5AC2Q9NZP5 309 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 ZFP30Q9Y2G7 519 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 SYNE2Q8WXH0 6885 aaKnown RBP-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 HEATR5BQ9P2D3 2071 aa-0.06□□□□□ -2.42
VPS13C-205ENST00000558088 A0A087WX48 190 aa-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 A0A1B0GTQ1 180 aa-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 SDCBPO00560 298 aaPredicted RBP-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 MRASO14807 208 aa-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 CASC3O15234 703 aaKnown RBP-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 MPZL2O60487 215 aa-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 SNAP29O95721 258 aa-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 PSMB8P28062 276 aa-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 CA5AP35218 305 aa-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 RPL27AP46776 148 aaKnown RBP-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 ETV1P50549 477 aa-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 DAPP51397 102 aa-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 STC1P52823 247 aa-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 EMP1P54849 157 aa-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 FXYD7P58549 80 aa-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 FGF12P61328 243 aa-0.07□□□□□ -2.42
VPS13C-205ENST00000558088 ASCL4Q6XD76 172 aa-0.07□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms