RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SLC38A11Q08AI6 406 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 ZNF146Q15072 292 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 C11orf53Q8IXP5 236 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 TCTEX1D2Q8WW35 142 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 GGACTQ9BVM4 153 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 INTS1Q8N201 2190 aaKnown RBP10.81□□□□□ -0.68
LDLR-207ENST00000558013 HBE1P02100 147 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 SLC25A6P12236 298 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 TNFRSF9Q07011 255 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 PYY3Q5JQD4 70 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 ACSM6Q6P461 480 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 C1QL4Q86Z23 238 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 ABHD5Q8WTS1 349 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 COQ2Q96H96 371 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 SLC25A22Q9H936 323 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 LIN7CQ9NUP9 197 aaKnown RBP10.81□□□□□ -0.68
LDLR-207ENST00000558013 MAP1LC3B2A6NCE7 125 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 OR5H1A6NKK0 313 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 ZG16O60844 167 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 HBZP02008 142 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 SP9P0CG40 484 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 HOXA5P20719 270 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 GABRA2P47869 451 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 VWA1Q6PCB0 445 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 NANOS1Q8WY41 292 aaKnown RBP10.81□□□□□ -0.68
LDLR-207ENST00000558013 TAF15Q92804 592 aaKnown RBP eCLIP10.81□□□□□ -0.68
LDLR-207ENST00000558013 TRIB1Q96RU8 372 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 MAP1LC3BQ9GZQ8 125 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 POLDIP2Q9Y2S7 368 aa10.81□□□□□ -0.68
LDLR-207ENST00000558013 TRAV1-1A0A0B4J248 108 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 PTBP3O95758 552 aaKnown RBP10.8□□□□□ -0.68
LDLR-207ENST00000558013 SOD3P08294 240 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 IL2RGP31785 369 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 SOX8P57073 446 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 SLC35E3Q7Z769 313 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 ZNF610Q8N9Z0 462 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 FRZBQ92765 325 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 GPR61Q9BZJ8 451 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 WIPI2Q9Y4P8 454 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 AKAP13Q12802 2813 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 A0A087WWC5 75 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 ODAMA1E959 279 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 LINC00473A8K010 186 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 NKX2-8O15522 239 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 TFF3Q07654 80 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 WDR25Q64LD2 544 aaPredicted RBP10.8□□□□□ -0.68
LDLR-207ENST00000558013 NECAP1Q8NC96 275 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 TOLLIPQ9H0E2 274 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 CISD1Q9NZ45 108 aaKnown RBP10.8□□□□□ -0.68
LDLR-207ENST00000558013 SPTBN2O15020 2390 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 ZNF883P0CG24 379 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 CD81P60033 236 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 HBG1P69891 147 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 HBG2P69892 147 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 S100A12P80511 92 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 LHX4Q969G2 390 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 GALMQ96C23 342 aa10.8□□□□□ -0.68
LDLR-207ENST00000558013 ST8SIA5O15466 376 aa10.79□□□□□ -0.68
LDLR-207ENST00000558013 GALR2O43603 387 aaPredicted RBP10.79□□□□□ -0.68
LDLR-207ENST00000558013 ZNF737O75373 536 aa10.79□□□□□ -0.68
LDLR-207ENST00000558013 RBMXL2O75526 392 aaKnown RBP10.79□□□□□ -0.68
LDLR-207ENST00000558013 CCL11P51671 97 aa10.79□□□□□ -0.68
LDLR-207ENST00000558013 FOXF2Q12947 444 aa10.79□□□□□ -0.68
LDLR-207ENST00000558013 OR13A1Q8NGR1 328 aa10.79□□□□□ -0.68
LDLR-207ENST00000558013 MBD3L1Q8WWY6 194 aa10.79□□□□□ -0.68
LDLR-207ENST00000558013 RPUSD4Q96CM3 377 aaKnown RBP10.79□□□□□ -0.68
LDLR-207ENST00000558013 TREM2Q9NZC2 230 aa10.79□□□□□ -0.68
LDLR-207ENST00000558013 RTP5Q14D33 572 aa10.79□□□□□ -0.68
LDLR-207ENST00000558013 GABRA6Q16445 453 aa10.79□□□□□ -0.68
LDLR-207ENST00000558013 DPPA3Q6W0C5 159 aa10.79□□□□□ -0.68
LDLR-207ENST00000558013 MOB1BQ7L9L4 216 aa10.79□□□□□ -0.68
LDLR-207ENST00000558013 FER1L6-AS2Q96M78 137 aa10.79□□□□□ -0.68
LDLR-207ENST00000558013 SLC39A9Q9NUM3 307 aa10.79□□□□□ -0.68
LDLR-207ENST00000558013 TRGC1P0CF51 173 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 EDDM3AQ14507 147 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 TMEM41BQ5BJD5 291 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 UTF1Q5T230 341 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 TMEM14EPQ6UXP3 125 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 ZNF645Q8N7E2 425 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 SNIP1Q8TAD8 396 aaKnown RBP10.78□□□□□ -0.68
LDLR-207ENST00000558013 FAM210BQ96KR6 192 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 FAM234AQ9H0X4 552 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 HIPK2Q9H2X6 1198 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 ZDHHC11Q9H8X9 412 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 SDF2L1Q9HCN8 221 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 PIEZO2Q9H5I5 2752 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 HOXB1P14653 301 aaPredicted RBP10.78□□□□□ -0.68
LDLR-207ENST00000558013 RAC2P15153 192 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 CDX1P47902 265 aaPredicted RBP10.78□□□□□ -0.68
LDLR-207ENST00000558013 ADIRFQ15847 76 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 GCSAMLQ5JQS6 135 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 Q8IYB0 196 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 OR10D4PQ8NGN7 298 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 OR51M1Q9H341 326 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 KCNIP1Q9NZI2 227 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 TMEM30CPA0ZSE6 113 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 LRRC30A6NM36 301 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 IQCF6A8MYZ5 107 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 IGHV2-70P01814 119 aa10.78□□□□□ -0.68
LDLR-207ENST00000558013 MRPL49Q13405 166 aaKnown RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms