RNA–Protein interactions for RNA: ENST00000557657.5

TMEM260-216, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-216ENST00000557657 RAB5BP61020 215 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 UTF1Q5T230 341 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 VHLLQ6RSH7 139 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 BEND4Q6ZU67 534 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 C12orf57Q99622 126 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 PSG11Q9UQ72 335 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 PLCE1Q9P212 2302 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 ODAMA1E959 279 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 OOEPA6NGQ2 149 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 WNT2P09544 360 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 FOLR2P14207 255 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 GCH1P30793 250 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 TNFRSF9Q07011 255 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 SLC35E4Q6ICL7 350 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 RBMS3Q6XE24 437 aaKnown RBP17.72■□□□□ 0.43
TMEM260-216ENST00000557657 ZNF429Q86V71 674 aa17.72■□□□□ 0.43
TMEM260-216ENST00000557657 OR2C1O95371 312 aa17.71■□□□□ 0.43
TMEM260-216ENST00000557657 CD82P27701 267 aa17.71■□□□□ 0.43
TMEM260-216ENST00000557657 Q3ZCU0 254 aa17.71■□□□□ 0.43
TMEM260-216ENST00000557657 PLSCR4Q9NRQ2 329 aa17.71■□□□□ 0.43
TMEM260-216ENST00000557657 EIF4EBP1Q13541 118 aaPredicted RBP17.71■□□□□ 0.43
TMEM260-216ENST00000557657 RHEBQ15382 184 aa17.71■□□□□ 0.43
TMEM260-216ENST00000557657 ZNF718Q3SXZ3 478 aa17.71■□□□□ 0.43
TMEM260-216ENST00000557657 ZNF506Q5JVG8 444 aa17.71■□□□□ 0.43
TMEM260-216ENST00000557657 FAM201AQ5SY85 155 aa17.71■□□□□ 0.43
TMEM260-216ENST00000557657 NINJ1Q92982 152 aa17.71■□□□□ 0.43
TMEM260-216ENST00000557657 FAM234AQ9H0X4 552 aa17.71■□□□□ 0.43
TMEM260-216ENST00000557657 ZNF318Q5VUA4 2279 aa17.7■□□□□ 0.42
TMEM260-216ENST00000557657 ZG16O60844 167 aa17.7■□□□□ 0.42
TMEM260-216ENST00000557657 CGAP01215 116 aa17.7■□□□□ 0.42
TMEM260-216ENST00000557657 IGKV1D-33P01593 117 aa17.7■□□□□ 0.42
TMEM260-216ENST00000557657 IGKV1-33P01594 117 aa17.7■□□□□ 0.42
TMEM260-216ENST00000557657 DEFA4P12838 97 aa17.7■□□□□ 0.42
TMEM260-216ENST00000557657 PAX6P26367 422 aa17.7■□□□□ 0.42
TMEM260-216ENST00000557657 DLK1P80370 383 aa17.7■□□□□ 0.42
TMEM260-216ENST00000557657 RCC1LQ96I51 464 aaKnown RBP17.7■□□□□ 0.42
TMEM260-216ENST00000557657 PROCRQ9UNN8 238 aa17.7■□□□□ 0.42
TMEM260-216ENST00000557657 GALR2O43603 387 aaPredicted RBP17.7■□□□□ 0.42
TMEM260-216ENST00000557657 TAGLN2P37802 199 aaKnown RBP17.7■□□□□ 0.42
TMEM260-216ENST00000557657 SLC38A11Q08AI6 406 aa17.7■□□□□ 0.42
TMEM260-216ENST00000557657 LRRC75BQ2VPJ9 315 aa17.7■□□□□ 0.42
TMEM260-216ENST00000557657 BHLHA15Q7RTS1 189 aaPredicted RBP17.7■□□□□ 0.42
TMEM260-216ENST00000557657 K7EM74 188 aa17.69■□□□□ 0.42
TMEM260-216ENST00000557657 IGLV1-44P01699 117 aa17.69■□□□□ 0.42
TMEM260-216ENST00000557657 KITLGP21583 273 aa17.69■□□□□ 0.42
TMEM260-216ENST00000557657 RAB11AP62491 216 aa17.69■□□□□ 0.42
TMEM260-216ENST00000557657 EIF2S3LQ2VIR3 472 aaKnown RBP17.69■□□□□ 0.42
TMEM260-216ENST00000557657 ZNF787Q6DD87 383 aa17.69■□□□□ 0.42
TMEM260-216ENST00000557657 WDR61Q9GZS3 305 aaKnown RBP17.69■□□□□ 0.42
TMEM260-216ENST00000557657 BTBD17A6NE02 478 aa17.69■□□□□ 0.42
TMEM260-216ENST00000557657 AGAP20933 346 aa17.69■□□□□ 0.42
TMEM260-216ENST00000557657 RAB2AP61019 212 aa17.69■□□□□ 0.42
TMEM260-216ENST00000557657 RBMXL2O75526 392 aaKnown RBP17.68■□□□□ 0.42
TMEM260-216ENST00000557657 SELLP14151 372 aa17.68■□□□□ 0.42
TMEM260-216ENST00000557657 CD200P41217 278 aa17.68■□□□□ 0.42
TMEM260-216ENST00000557657 TUBA4BQ9H853 241 aa17.68■□□□□ 0.42
TMEM260-216ENST00000557657 IGKV1D-17A0A075B6S4 117 aa17.68■□□□□ 0.42
TMEM260-216ENST00000557657 LOC102723971A0A1B0GUV8 181 aa17.68■□□□□ 0.42
TMEM260-216ENST00000557657 M0R1B8 84 aa17.68■□□□□ 0.42
TMEM260-216ENST00000557657 PROP1O75360 226 aa17.68■□□□□ 0.42
TMEM260-216ENST00000557657 P0C879 139 aa17.68■□□□□ 0.42
TMEM260-216ENST00000557657 PRDX2P32119 198 aa17.68■□□□□ 0.42
TMEM260-216ENST00000557657 ZNRF1Q8ND25 227 aa17.68■□□□□ 0.42
TMEM260-216ENST00000557657 LRRC30A6NM36 301 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 ACAA1P09110 424 aaPredicted RBP17.67■□□□□ 0.42
TMEM260-216ENST00000557657 HBG1P69891 147 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 HBG2P69892 147 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 SMIM21Q3B7S5 101 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 SSX9Q7RTT3 188 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 TMPRSS5Q9H3S3 457 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 HSPB7Q9UBY9 170 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 RNF212BA8MTL3 300 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 HSPB1P04792 205 aaKnown RBP17.67■□□□□ 0.42
TMEM260-216ENST00000557657 NCR3LG1Q68D85 454 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 ZNF474Q6S9Z5 364 aaPredicted RBP17.67■□□□□ 0.42
TMEM260-216ENST00000557657 TMEM14EPQ6UXP3 125 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 C22orf34Q6ZV56 151 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 KDF1Q8NAX2 398 aaPredicted RBP17.67■□□□□ 0.42
TMEM260-216ENST00000557657 C1orf162Q8NEQ5 155 aaPredicted RBP17.67■□□□□ 0.42
TMEM260-216ENST00000557657 TAF15Q92804 592 aaKnown RBP eCLIP17.67■□□□□ 0.42
TMEM260-216ENST00000557657 LEAP2Q969E1 77 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 S100PBPQ96BU1 408 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 MUCL1Q96DR8 90 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 YPEL4Q96NS1 127 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 AGMATQ9BSE5 352 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 SLC25A15Q9Y619 301 aa17.67■□□□□ 0.42
TMEM260-216ENST00000557657 C5orf52A6NGY3 159 aa17.66■□□□□ 0.42
TMEM260-216ENST00000557657 PPIHO43447 177 aaKnown RBP17.66■□□□□ 0.42
TMEM260-216ENST00000557657 S100A6P06703 90 aa17.66■□□□□ 0.42
TMEM260-216ENST00000557657 VKORC1L1Q8N0U8 176 aa17.66■□□□□ 0.42
TMEM260-216ENST00000557657 C15orf65H3BRN8 121 aa17.66■□□□□ 0.42
TMEM260-216ENST00000557657 CXCL1P09341 107 aa17.66■□□□□ 0.42
TMEM260-216ENST00000557657 HOXB1P14653 301 aaPredicted RBP17.66■□□□□ 0.42
TMEM260-216ENST00000557657 NQO2P16083 231 aa17.66■□□□□ 0.42
TMEM260-216ENST00000557657 RNF212Q495C1 297 aa17.66■□□□□ 0.42
TMEM260-216ENST00000557657 ACSM6Q6P461 480 aa17.66■□□□□ 0.42
TMEM260-216ENST00000557657 ZNF561Q8N587 486 aa17.66■□□□□ 0.42
TMEM260-216ENST00000557657 RPP25LQ8N5L8 163 aaKnown RBP17.66■□□□□ 0.42
TMEM260-216ENST00000557657 PCNX1Q96RV3 2341 aa17.65■□□□□ 0.42
TMEM260-216ENST00000557657 ERVFRD-1P60508 538 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms