RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TMEM265A0A087WTH1 108 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 A0A087X0K7 114 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 FOXI3A8MTJ6 420 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-226ENST00000556825 C4orf51C9J302 202 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 IGFBP2P18065 325 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 ID1P41134 155 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 RNF144BQ7Z419 303 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 SPCS1Q9Y6A9 102 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 A0A0G2JLM5 398 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 A0A1W2PP11 408 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 PNMTP11086 282 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 GNG4P50150 75 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 LRRC75BQ2VPJ9 315 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 COX19Q49B96 90 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 ZNF841Q6ZN19 808 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 LRRC25Q8N386 305 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-226ENST00000556825 RPP25LQ8N5L8 163 aaKnown RBP11.74□□□□□ -0.53
SHMT2-226ENST00000556825 OR51T1Q8NGJ9 327 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 DEFB118Q96PH6 123 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 HES4Q9HCC6 221 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 SCRT2Q9NQ03 307 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 FAM206AQ9NX38 181 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 IL36GQ9NZH8 169 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 WNT16Q9UBV4 365 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 ANXA10Q9UJ72 324 aa11.74□□□□□ -0.53
SHMT2-226ENST00000556825 NXT1Q9UKK6 140 aaKnown RBP11.74□□□□□ -0.53
SHMT2-226ENST00000556825 FANCMQ8IYD8 2048 aa11.73□□□□□ -0.53
SHMT2-226ENST00000556825 PAGE4O60829 102 aa11.73□□□□□ -0.53
SHMT2-226ENST00000556825 TBL1XO60907 577 aa11.73□□□□□ -0.53
SHMT2-226ENST00000556825 USF1P22415 310 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-226ENST00000556825 OR1D5P58170 312 aa11.73□□□□□ -0.53
SHMT2-226ENST00000556825 NRN1LQ496H8 165 aa11.73□□□□□ -0.53
SHMT2-226ENST00000556825 HSD11B1LQ7Z5J1 315 aa11.73□□□□□ -0.53
SHMT2-226ENST00000556825 SMIM20Q8N5G0 67 aa11.73□□□□□ -0.53
SHMT2-226ENST00000556825 OR52N5Q8NH56 324 aa11.73□□□□□ -0.53
SHMT2-226ENST00000556825 RAX2Q96IS3 184 aa11.73□□□□□ -0.53
SHMT2-226ENST00000556825 GP6Q9HCN6 339 aa11.73□□□□□ -0.53
SHMT2-226ENST00000556825 PTRH2Q9Y3E5 179 aaKnown RBP11.73□□□□□ -0.53
SHMT2-226ENST00000556825 TRAV38-1A0A0B4J264 116 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 A6NDN8 102 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 C2orf70A6NJV1 201 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 OR3A4PP47883 348 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 ZIC1Q15915 447 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 KIF26BQ2KJY2 2108 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 ZNF585BQ52M93 769 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 Q6ZVL8 140 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 ZNF114Q8NC26 417 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 OR10X1Q8NGY0 326 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 OR2A5Q96R48 311 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 NAT8BQ9UHF3 227 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 UFC1Q9Y3C8 167 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 ARL2-SNX15V9GYD0 113 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 OR4C46A6NHA9 309 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 LATO43561 262 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 HBZP02008 142 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 HTR1DP28221 377 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 BLVRBP30043 206 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-226ENST00000556825 TMEM97Q5BJF2 176 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 PLCXD3Q63HM9 321 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 LHFPL2Q6ZUX7 228 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-226ENST00000556825 ZAR1Q86SH2 424 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 QTRT1Q9BXR0 403 aaKnown RBP11.72□□□□□ -0.53
SHMT2-226ENST00000556825 MS4A5Q9H3V2 200 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 NECAP2Q9NVZ3 263 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 TBC1D29Q9UFV1 150 aa11.72□□□□□ -0.53
SHMT2-226ENST00000556825 LOC101059948A0A1B0GTJ6 334 aa11.71□□□□□ -0.53
SHMT2-226ENST00000556825 CTXND1A0A1B0GTU2 59 aa11.71□□□□□ -0.53
SHMT2-226ENST00000556825 A0A1W2PPM0 123 aa11.71□□□□□ -0.53
SHMT2-226ENST00000556825 C11orf94C9JXX5 98 aa11.71□□□□□ -0.53
SHMT2-226ENST00000556825 STC2O76061 302 aa11.71□□□□□ -0.53
SHMT2-226ENST00000556825 STATHP02808 62 aa11.71□□□□□ -0.53
SHMT2-226ENST00000556825 FRMD6-AS1P0C7T7 363 aa11.71□□□□□ -0.53
SHMT2-226ENST00000556825 FABP6P51161 128 aa11.71□□□□□ -0.53
SHMT2-226ENST00000556825 GNB1P62873 340 aa11.71□□□□□ -0.53
SHMT2-226ENST00000556825 SPACA5Q96QH8 159 aa11.71□□□□□ -0.53
SHMT2-226ENST00000556825 SERTAD4Q9NUC0 356 aa11.71□□□□□ -0.53
SHMT2-226ENST00000556825 C1RLQ9NZP8 487 aa11.71□□□□□ -0.53
SHMT2-226ENST00000556825 ZNF835Q9Y2P0 537 aa11.71□□□□□ -0.53
SHMT2-226ENST00000556825 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-226ENST00000556825 IGKV1D-42A0A075B6H8 117 aa11.71□□□□□ -0.54
SHMT2-226ENST00000556825 A0A0J9YY10 115 aa11.71□□□□□ -0.54
SHMT2-226ENST00000556825 A0A1B0GX78 115 aa11.71□□□□□ -0.54
SHMT2-226ENST00000556825 GRXCR1A8MXD5 290 aa11.71□□□□□ -0.54
SHMT2-226ENST00000556825 SLC17A3O00476 420 aa11.71□□□□□ -0.54
SHMT2-226ENST00000556825 ADAM20O43506 726 aa11.71□□□□□ -0.54
SHMT2-226ENST00000556825 IGKV1D-33P01593 117 aa11.71□□□□□ -0.54
SHMT2-226ENST00000556825 IGKV1-33P01594 117 aa11.71□□□□□ -0.54
SHMT2-226ENST00000556825 PTGDSP41222 190 aa11.71□□□□□ -0.54
SHMT2-226ENST00000556825 FXYD4P59646 89 aa11.71□□□□□ -0.54
SHMT2-226ENST00000556825 ZNF525Q8N782 197 aa11.71□□□□□ -0.54
SHMT2-226ENST00000556825 CDRT4Q8N9R6 151 aa11.71□□□□□ -0.54
SHMT2-226ENST00000556825 OR52E5Q8NH55 327 aa11.71□□□□□ -0.54
SHMT2-226ENST00000556825 MCTS1Q9ULC4 181 aaKnown RBP11.71□□□□□ -0.54
SHMT2-226ENST00000556825 C3orf85A0A1B0GTC6 90 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 LIPT2A6NK58 231 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 HIST1H1EP10412 219 aaKnown RBP11.7□□□□□ -0.54
SHMT2-226ENST00000556825 SRIP30626 198 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 EGR4Q05215 589 aa11.7□□□□□ -0.54
SHMT2-226ENST00000556825 SRSF6Q13247 344 aaKnown RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms